Array 1 389526-387972 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912608.1 Desulfonatronum lacustre DSM 10312 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 389525 29 100.0 32 ............................. CCGAGCGAATCCGTGTAATCTGTGTACCTGGA 389464 29 100.0 32 ............................. AACGTCAACTGATTCGAGCGTCGCACCATCCA 389403 29 100.0 32 ............................. CCCGCCATGTGAGAGAAGCCAAAGTGGTTTCG 389342 29 100.0 32 ............................. CTACTGAGGATTCCCCAGTAACCCTCATTGAT 389281 29 100.0 32 ............................. ATATGGAAGTTCTGCAAAAGATTAAAAGAGAA 389220 29 100.0 32 ............................. CTGGGGGCCTGAATCAGTCGCAGCTTGGGCTC 389159 29 100.0 32 ............................. TCGGCGGTGTAGTATTCGACCCAGACGCCCTT 389098 29 100.0 32 ............................. GCCCCTGGCGGGGCTCCTTGCTCCTTCGTCGC 389037 29 100.0 32 ............................. GCTTGCTTGATATCCGAGCATTTAGAAATGTA 388976 29 100.0 32 ............................. ACCCCACGGTCGCCTCGACTTTACTGTCTTCG 388915 29 100.0 32 ............................. GGGTCGGAATCACTCTTCCGGCGTTGCCAATG 388854 29 100.0 32 ............................. GCGTACGTGCCCGGCATGGCCGTGGACATCAA 388793 29 100.0 32 ............................. TTCCCCCTGTTGGGTTTCCATCTTGATCGAGA 388732 29 100.0 32 ............................. TGCTCCTGGCCAAAGGCGCTGTCATGCCCAAA 388671 29 96.6 32 ............................T CAAGCGCGCAGATGAACTTATAGATGTATATG 388610 29 100.0 32 ............................. GCACCCGGCACATCAACCTGCACATCAACTCC 388549 29 100.0 32 ............................. TTCGAGCGGGACGAACACGGGCAGGTCGTGGA 388488 29 100.0 32 ............................. ACCCGTGACGCCGCCATTGACGGCATCCTGCT 388427 29 100.0 32 ............................. GCGTTGACTCCCGTCCGCGTGGTCGGCCCGGA 388366 29 100.0 32 ............................. TTCGAGAGGGACGAACACGGGCAGGTCGTGGA 388305 29 100.0 32 ............................. CGCCGTCATGGCCGCTGGCGCAAACTACGCGG 388244 29 100.0 32 ............................. AAATCATCGCCGAAACAACGCGCCTGATGAAC 388183 29 100.0 32 ............................. ACATTATCAAGGTGGGAGTTGATTCAGTAGGT 388122 29 100.0 32 ............................. CCCTTGGGCCTTGAGGTCGTCATCCAGGGTCA 388061 29 100.0 32 ............................. ACCCCGGAGCAGATCGACGATTTGTTCAGGGC 388000 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GCGTTCCCCACACACGTGGGGATGAACCG # Left flank : GCAAGATCATCCCATCAATCGAGGAGATCCTGGCCGCCGGCGGCCTGAACGTGCCCGAAGCCCACCCCGAGGCCGTGGCCCCGGCCATCCCGAACAAGGAGAACATCGGCGATGCTGGTCATCGTGGTTGAAAACGCCCCGCCCAGGTTGCGCGGACGACTGGCCTTGTGGTTGCTGGAGGTTCGGGCCGGAGTGTATGTGGGCAAGGTCTCGCGACGAGTCAGGGAAATGATCTGGGCCAATGTGAAAGACGGAATCGACCAGGGCAACGCGGTCATGGCCTGGACCACGAACACCGAATCCGGCTTCGACTTCCAAACCCTGGGAACCAATCGACGTATCCCCGTGGAAATGGACGGAATCAAACTGGTTTCCTTCCTGCCCGAGGAGAAGGAGGGGAGCGAACAGGATGAGATTGCAAGCAGCTGACAATGTTGACTTTGATTCGGTGCAACTTTGCCCCTTAAAAAACGCCTAGGAAATCAACAAAGTACAGCAAG # Right flank : GAGGCGTTGGAGAGGGTCAGGGGTCAGAATCTTAACAAAGAGGGGTACCACGAGTTGTACGAAAAAACGTACAACTGCAACTGGCCGCGGATGATGGCAAGTCATACGCCACCGACTGCGCCAACACAGAAACCGTATTCCGCATCATCCAAACTATCCCATCACCCAAGGCCGAACATGGAACGGCTGTACACCGTCTGCTACGATGTCCGAGATCAGCGTCGCTGGCGCAACTCTACAAGGCTATGCAAAATCTGGCACGAGACACGAACCGTTTTCCGGGGCATTTCTGCCCCGGCCTCATTGAAGCTTGGCCACCATCGAATCCAACCCCGACAACTTTCTGCGCGAGATGCGGGGTTATACAAGAAATCAGTAATGATATCTGGCCTGGAGAAAATCGATCCGTTCATCCCGGACCAGATAAACGAGGCGGTGTTCCTGGGTGATGCGTCGGGACCAAATGCCGGGGGCGAGGTGTTTGAGGGGTTCGGGTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1558642-1557335 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912608.1 Desulfonatronum lacustre DSM 10312 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1558641 33 100.0 34 ................................. TTTAATAGAGATCCCACCCCCCACCCTTGTGATC 1558574 33 100.0 35 ................................. ACGATTAACCTTTCCGGGAGTGAGAGGTTTTCAAG 1558506 33 100.0 34 ................................. AATGTGTTGGCATCTGTCGCTGTTCCTCGGCCAA 1558439 33 100.0 34 ................................. ACGCTCCAGGAGATCATGGCCGCCATGCGCCACA 1558372 33 100.0 34 ................................. TTTACTTGGGGGAAAATATGGAATTTCCTATACA 1558305 33 100.0 34 ................................. CTTTCAGGGGTCTTGGTTGCTCTTAGACTCACAG 1558238 33 100.0 34 ................................. GAACCTTCTACCACGGAAATAATGCGACCTCGCC 1558171 33 100.0 34 ................................. ATGTCTTTCTTCAACGGCCCAGGTCCTGGATTCA 1558104 33 100.0 34 ................................. CTCATCCCTTGCTGTAACAGGATTTGGGTGTATT 1558037 33 100.0 35 ................................. ATCATCGGCCTGCACGCCCTGTTCGAAGTCGGCGG 1557969 33 100.0 34 ................................. ACGACCTCCTTTTTGAAAATCCGCTACGCTCTCA 1557902 33 100.0 34 ................................. TGTTTCATGGGTTGCACGCTACATGATAGGAAAA 1557835 33 100.0 34 ................................. TTGCGCGGGCGGCTGCGGCGGGTGACCCATTGTT 1557768 33 100.0 33 ................................. TCCTGTTGAAGGTTGCGGTTACGGTTACGGAAA 1557702 33 100.0 33 ................................. ATGTCCCACTCCTGAACGTTCCACCATTTTCCG 1557636 33 100.0 33 ................................. AAAAAATGCGGCCCGGACGTTAACGATGACCTT 1557570 33 100.0 35 ................................. AATAAATGAAGAAGTAAATGGGATTATAGATGCTT 1557502 33 100.0 35 ................................. AAACTACAGTAGAAAATGCCGGTCAAGGTGCTGTT 1557434 33 100.0 34 ................................. CGGCCCGCGAACCGGGGGCTGGCGTGGGACCGGG 1557367 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 20 33 100.0 34 GTCGCCCCCCGCGCGGGGGGCGTGGATTGAAAC # Left flank : CCGCCGTTTATCTGGAGGTGATGCAATTCCATGTTCGTCCTTGTCAGTTACGACGTGTCCACATCCGATCCCGGCGGTCCGGGACGTCTGCGCCGAGTGGCTAAAATTTGTAAGAACCATGGGCAGCGTGTTCAATTCTCTGTGTTCGAGTGCATTGTCGATCCTGCCCAGTGGACCAAGCTGAAACAGCAACTGCTCGACGAAATCAACCCGGAAAAGGACAGCCTGCGATTCTATTTTCTCGGCTCCAACTGGCGAAAACGGGTGGAGCACGCCGGAGCAAAAGAGCCTTTTGACCAGGAAGGCCCGCTGGTCATTTAGCGCTCCGCGAACCTGAAGCTGCGGTAAAAATGACGGTAGGTTCGCGCGGAATACAACATTTTGATTTTTATCGATAAATATTTCTGCTTGATTTTTTGACACTTCTTACACGCTGCAAATCGGAGGTTCGCGATTATCTGGCTTTGAATCCTTGGGCGGCAAAGGAATGGAAGCCAACA # Right flank : GCTTCGTAGGTTGATCTTGTTCTCAGCCTTTTCGCGTAAAGGTCAACACTGCCCAGGGCAGGTCGGTGAAGAGTTCGGCTGCGGTGAGTACGCCGTCCGTCGGCGATATGGAACGGTGGGTGAAGCGGTCTTGCCAGCGACCGTCCTTGCCGGCTTTGGGAAGGGTTGTGTTCAGGGCGATGGTCGAGGCCGACCAGGGTTCGCCGGTGGGAAATCCGCCGTCCGGTGGGCAAAGGTCCGCGACGAGGCGGGGCAGGGCTACGATGACCGCCTGTCGCCCATGGGTCCGATGGATACGGGCAAAGGCGAGGATGTTGTTCGCTCTGGTCCCGGAAACCTCCAGAGGGACGTAGTTCCCGTTCAGAAACAGCTCCGGATGGGCGCGGCGCAGCGTCAGCAGGCGCCATTGGACGTATTGCTTGATGCGCCCGTCGTGCCAGGTCCTTTTGAGCAACGCCACGTAGCCTCTTTGATTGTCTTCGGCCTTTGCGGCTTGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCGCGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //