Array 1 456396-458602 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITR01000001.1 Clostridium autoethanogenum strain JA1-1 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 456396 30 100.0 36 .............................. TGTGTTATACTTACGTGCTCCCATCCTTTTCCGTTA 456462 30 100.0 36 .............................. GTGTCTAATATAATAGCACCTGTCACACTATCATAC 456528 30 100.0 36 .............................. TTGTCTTTGTTGCTACATACACTCCAATAACAAATA 456594 30 100.0 36 .............................. TGAAAGAGGCTGATTTAATATTTGTGGATCCGCCTT 456660 30 100.0 36 .............................. GGAGGTATAAAATTTATGAATATTTTAGGAGTTGAT 456726 30 100.0 35 .............................. TATATATCTATACCTTTTAACAATTTAAATACCTC 456791 30 100.0 36 .............................. TTTCTCTTATAGATCCTTTAATTCTTCTATAGCTTC 456857 30 100.0 35 .............................. CCTCATATTCTTTTAATAATTTATAAAATGTATTT 456922 30 100.0 36 .............................. AATATATGTGAAATTCTTTCTCTTGTTGCTGTCAAA 456988 30 100.0 37 .............................. AATACATCTATATGCTTAATGCATGTAGTATCTATAC 457055 30 100.0 36 .............................. TCATCTGCTTATTAGCAATTTTATACTCCTTCTCAA 457121 30 100.0 35 .............................. GTACCTCCTGCACACATAGCAGCAACAAAAGCCAT 457186 30 100.0 36 .............................. TAATTTCTAATTCTATTGTATTCGCTAATAAGGCAA 457252 30 100.0 36 .............................. GTAAAAAACAATTTATTGCACTGATCTATGGTTATG 457318 30 100.0 36 .............................. CTCTAAAGCAAAAATGTGTTACATAGTGCGTGGAAG 457384 30 100.0 36 .............................. ATGGTTGCACTTGGAACTTTATTTTCATTTTCTTTT 457450 30 100.0 35 .............................. TCTTTTGATATGGCCCCTGCATGAGAAAGTTGTTG 457515 30 100.0 36 .............................. GATGTTGTTGTTCCACTTAAATTATTTACGTATATA 457581 30 100.0 36 .............................. TTTTTTTCTTCCATCTCACTTTTTTCTTTCTGCAGC 457647 30 100.0 36 .............................. ATTTAACTGTAAGGTATCTTTTAAACAGCCTAATAT 457713 30 100.0 36 .............................. AAATAAGTACAGAGATCTAGGAGAAGATATATTTCC 457779 30 100.0 35 .............................. TTTGTTAGCCGCCTTGGTGTATCCCAAGTAACCAC 457844 30 100.0 35 .............................. TTTTTGGGAATTACTATTTAAAATGGGTGAGCAAT 457909 30 100.0 37 .............................. TGAGAGATATTAATAGAGATATTAATTGCTGGGATAG 457976 30 100.0 36 .............................. TAATGCTAGTGGACTTAATTTTCTTAAGGTAATAGA 458042 30 100.0 36 .............................. ATTCATGGAATATATTTCTTTTTATATTTAATGCCC 458108 30 100.0 36 .............................. GCACCTAAGTAATCTATAAGTAAAGTATCAACTCTT 458174 30 100.0 36 .............................. GAATTTATATAAACCCAATCAGAATATATATAATTA 458240 30 100.0 37 .............................. TAAATTAATATTCAAGATAGCAGAGCCAAGTACAAAT 458307 30 100.0 37 .............................. ACGCTATAGCTGTTAGCAAACATACTTTATAATCATC 458374 30 100.0 36 .............................. AGAGTACGTTCCCCAAAAGTGGGGAGAGTTGATATA 458440 30 100.0 37 .............................. CGGTGTGGCTTGATAACTATTTTGAAAATAACCACCT 458507 30 93.3 36 .........T......G............. AGTAATTGGAATGTTAATATTTGATCATTAGCTACT 458573 30 86.7 0 .........T.....G........C...T. | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.4 36 GTTGAACCTCAACATAAGATGTATTTAAAT # Left flank : TTTTTATTAGTCATGTCAAATTCATATCGCTCATAAGGCTTTTTTAAAGTAATGTTAAATTTAGTAGGAAAATTATTTTTTGTATATTCTGTAAAAGAGTTTCCATCTTCTGAAACATCAATTTTACTTAAATCGCTTCGCCACTCATATTTATTGTTGTTTGTAACTACGTCCCATACTTTTTTAATATCTGATTTAAATGTAGTTGTAATGGTCGATTCCTTCATAATACACATTCTCCCTCATAAATTTACTATTTATCTGTATATTGTACAAATAAATTATACTATTTTATACAATATATTACTACATTTTGTTGAGTATTTTCCAACTAATTTGGAGGATAGAGATGTCTTAAGTCATTTGAATTCAATGGATGAGGGTACTTTTTTTATTGAGTTTGTGAAAAGTGAAAAACGGTTGGAAAATTTTCTGTTGATGCCTTTATTATTAAGGGTTTTAGGACTATAATGAAAATAAGAAATGGCTATTTTACTGTG # Right flank : TTGAAAAATTAGGAATATAGTAGACTCTATTATAACGTGAGATTGATGAAAGTCTATAGTCTTAAAACTATTGAAATTACTAAGGTTTTTCTCTGAATTTATATTAATATAACAGGAAGGGTGGTATTTTTGATAAAAAAATTGCATGGGTATCTAATAAATTTATCCATATTTAAGTTTATTTTAATTACATCAATAATACCGTTCTTTATATCATATATTGCTAGTTTAGTAATAAAAAATTATGTAAGGCAATTTCCTAATGACATTCTTAAGGTAAATAATTCATTAATAACAAATGTATCATTTACTATTAATGGCATTTTTATTGCACCATTAGTTGAAACATTTATATTTGTAATAATAATAAGTATATTTTTATATTATTCATATTCCCAAACCATACAAATAATTGCAGTAATTGTAGCTGCAATATGTTTTGGAATTCCTCACTTTTTTAACACCAATGATATGATATGGGGATTATATTGGGCAATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 460371-463174 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITR01000001.1 Clostridium autoethanogenum strain JA1-1 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 460371 30 100.0 36 .............................. GCGAATAGTACCTTTGGTTTTTGCTCCTGGAGCTGC 460437 30 100.0 36 .............................. TATTCTACAATTTGGTTTGTTTCTTTATTTATACAT 460503 30 100.0 36 .............................. TATATGCCTGTAATTAATAAAATTACTGCTATTATT 460569 30 100.0 36 .............................. CCAACTTGATAAGGTGTAAAACATATGTTTTCATTT 460635 30 100.0 36 .............................. ACTTCGCTAAATTATGTTTTAACGAAGTTGTGCAAA 460701 30 100.0 36 .............................. AAGGACAAAACGCTAGGAATTTTGAGCCTAACCAAT 460767 30 100.0 36 .............................. AAAAAATGACTAATATAATATTATCTTATCCATTAT 460833 30 100.0 36 .............................. CAGGTAAAATTCGATTATTCTGTAGTAGAGAATGTA 460899 30 100.0 36 .............................. TGTTTGGAGTAATAAATTATACACAAAATAGTGGGC 460965 30 100.0 36 .............................. TGATGTAATTATTCCTAATCCAGTATCTTTAGCACC 461031 30 100.0 36 .............................. CCTTTTTTTAACTCTATATTTTTTATTAAGTTATCA 461097 30 100.0 35 .............................. TTTTCTAGTAATAGAGGTTCCTTTTCTCCACCAAC 461162 30 100.0 34 .............................. CAGTCTACTCGATACAATGGCTTAAACTGCTTAA 461226 30 100.0 36 .............................. CAGTATAAAGCTCCAACTTTTATATGCCGAAGCTTT 461292 30 100.0 38 .............................. GTAATAACTGTTGGAACTGCTATAAGTAGTAAGCCAAA 461360 30 100.0 36 .............................. TAGCATCCCATACAGTTTTGAGTGTGTCTTTTATCG 461426 30 100.0 36 .............................. TAATCATTTTGTTGCTTAGTTATACTATCTTTAAAA 461492 30 100.0 36 .............................. CGAGCAAATTCTAACATTGCATTTAATTGTGGTCTA 461558 30 100.0 36 .............................. GGGATTAGATCAGGATGAAATTGAACTGCTATAGAG 461624 30 100.0 35 .............................. GACATTGCAGATGTATATTTAAAGTTTGGCCAATA 461689 30 100.0 36 .............................. TTTATACATTCCTCCATTTTTATACTAATTATTTAA 461755 30 100.0 36 .............................. TGGAAAGGAAGTATAATATGATAGATGAGATATTAA 461821 30 100.0 37 .............................. CTTACTATTTTGAGTTGGGTTATCTCCTTCTTTTTCA 461888 30 100.0 38 .............................. TTTGTAAGCAGAAAAATCCATATCTCTACCTTGTCCTA 461956 30 100.0 36 .............................. CTTACAGGCGTATGTCCAAGATCATTTACTGCCTCC 462022 30 100.0 36 .............................. TTTTTTTACCTTCTTAAAATTGCTGAAGCCTAGACT 462088 30 100.0 37 .............................. CAATAATATGGAGCAAAAATAATACCAGTACCTAAAA 462155 30 100.0 35 .............................. CTTACATAACCAGATATAGCATCTAAGAAATGTTT 462220 30 100.0 35 .............................. TAAATAGTAGACCATCCAGTCTGATTGCACGGCAT 462285 30 100.0 36 .............................. TAAATCGAATAAAGGATAAGAGCTTTCAATAATGAT 462351 30 100.0 37 .............................. CTGGGAGATTATCCATTCAATAGGTTTATTTGATTTT 462418 30 100.0 36 .............................. TTCTTGCCCAAGGGAATCCTTCTTCTTTGTATCTGC 462484 30 100.0 37 .............................. TTCATCTACAATTTTTTCTATTTCTTCTTTTGTGACG 462551 30 100.0 36 .............................. ATTTCATTTGCTGTTAAAAGTCTTATTTCTTCCATA 462617 30 100.0 35 .............................. AAGTCAATGCAAATACTGATAAAGTAAACAATAAA 462682 30 100.0 35 .............................. TGAAATATAGTAATGTAGAATTGGCGAAAATTAAA 462747 30 100.0 37 .............................. GTGGATTTAGGATCTTTTGTGAAGTTTCTATTTATAA 462814 30 100.0 37 .............................. AAACTTCCATCATTAGGATACATATCAAGTATTTCAA 462881 30 100.0 34 .............................. AACTTAATTACCCTTCCAAGTGGCTCTATAGTTG 462945 30 93.3 37 .........T......G............. TGAAAATCTTTTAAAGAAGTATATGGTCTATTTTTTA 463012 30 90.0 37 A........T......G............. TAATAATCTCTGGCATTTTCCTCGTCTGGAGCTATAA 463079 30 90.0 36 .......T..............GA...... AAATAATAATTGTAAATAATACATTATAAAGGAATT 463145 30 80.0 0 A.......AT..T....A....T....... | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 98.9 36 GTTGAACCTCAACATGAGATGTATTTAAAT # Left flank : TTATTTGCTTCCAAAACACCAATTATTTGTCGTCAAGTTTATTTTATACTGAATTCATAGAGCTAAGCATGTTATCTATTTTGACAGTAGTATTGATATTCTTATTTCGAAAAAATCTTTTTTATGATAAGTCTTTTTCAACCAATTTACGAAGTAAAGGTGCTTAAAGTTATTTGAATTTAATGGCTTAGGGCACTTTTTTATTGAGTTTATGAAAATGAAGTTGAATCTTAAAGGTGCTTTTTTATTTGAAATAAAAAAATGGTTAGAGAATTTTGGTAAAAACTTATTGTGTGTTTCAAACTAAATATCATGGGTAGATTTTTTCCAACCTCTTTGAAGGTAAAGTGTGCTTAAGTGCATTGATATGTAATGGATTGAGGCATTTTTTTGGCTGAGTTTATGAAAAGTGAAAAACGGTTGGAAAATTTTCAGCGAATGCCTTTATTGTTAAGGGTTTTAGGGTTATAATGAAAATAAAGAATGGCTATTTTACTGTG # Right flank : TACTTTATTGGTATAACTTTGAATTATCGTCAAAGTGATGATAGTTGAACCGTAACAAATGTTGTATGAAACAGATTTGTTTAAATTAATTCTAAATATTTCTCAATACTTCAACTTTATTGGTTTTACTATGAATATAAATTTGATTTAAGTACAATAATATAAATGTAAACAGAATTTACTCTATAGATGATATAAACATCAGAAAATATTGGATTATGGTTATCGTCTTTTTTATCATCTGCTTAGTAAAATCAACAATATGTATAGATGCAAAGCTAACCATAAAAAGATAATCCTGTTATACTAAATTTATCTAAAAAGCTCCTCATATTTGCAGGACTTTCCATAAATTAATCGAATAATAACATATATGGAAGACAAATCTTTGTAATATACAAATGAATGGAGGGTGATTATGGAAATAAATCAAATAAACATTAAAGTATACATTCTAGAGAATATTTCTATAGAACAGGCATTGGAAGATCTAAGCAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 473769-472350 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITR01000001.1 Clostridium autoethanogenum strain JA1-1 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 473768 30 100.0 36 .............................. AGGAACAACTGGGTGGAGTGCTGATGCTGTAGATAA 473702 30 100.0 36 .............................. GCTATCAAGAATTTGTTCTTCAAGCTTTTTAATTTC 473636 30 100.0 37 .............................. TTTCTTCTGCTGCTTGTACATCCCTGCGCATTGAATT 473569 30 100.0 37 .............................. TAATGGAAGATGTAAATGAAGAATTAAGTATTCAAAC 473502 30 100.0 36 .............................. CTAACAGAAAATAAAGCCGGATTTTAAAGGAGGGAC 473436 30 100.0 35 .............................. AATTAAATCTTCTATTTCTTTATCTGTATTGTTTA 473371 30 100.0 36 .............................. TTAACATAGTACCTGATGCGTATTATTTTGCAAACT 473305 30 100.0 36 .............................. CACAATGTGCAAACGGAGGAATTGTTTCTTCTGATA 473239 30 100.0 37 .............................. TTAAAACCCTCGGTATATTGTGCATCGCCTAAAGCTA 473172 30 100.0 36 .............................. ACCCAATAAAATATACGTTGGTATACCTGTAGACAT 473106 30 100.0 36 .............................. AGAAAAAGCCTGAACATATACGTATTATATTTAAAG 473040 30 100.0 36 .............................. GGAATTAAAAAGTTATAAGATAGACGACATATCATA 472974 30 100.0 36 .............................. TTAGTTATTCCAGTTCCGAGATTGGTATCTGTATTC 472908 30 100.0 36 .............................. GTAATTCTCTACATATTCAAGCCCGGCGTTTATATC 472842 30 100.0 36 .............................. TTATATGGCAAGTCTTTTGGTGTACTTGGATCTGCA 472776 30 100.0 36 .............................. GCATCAACTTCAGGTATAATTTGAAGCTTTTGAAAT 472710 30 100.0 36 .............................. CCAAATGCCTTTCAGGAACAGGCATAACCTTAATTT 472644 30 100.0 35 .............................. ACAACCACTACAAAGAATACTCCTACAAAAGAAAC 472579 30 100.0 36 .............................. GGCCATTAGTGCATTAGGCGTTGACGAGTTTTGGCA 472513 30 100.0 36 .............................. AAGTATATTTAAACAAATTATAGAAGGATGGAGCAA 472447 30 100.0 38 .............................. GGGAAGCTTTATATTTAAATTTAAGTCTTTAGCAGGAA 472379 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 36 ATTTAAATACATCTCATGTTGAGGTTCAAC # Left flank : CTTATAAGCAAACTCCATCTGAACCTAAGAATCACTTGATAGTCCAATTCCGTGCTCCTCCTAATATATATTTTTAGGATTGTGCAGAGGCTATTTGTATTTGTGCAATAGCCCCTGCTATGCACACACAATCAATGTTAACACAAAAATGCTCCTTTCTTTAAGCTCTTATATATAGTATATGTATCCATTTTTACTCACTTATTATTCTTTTTTGTTCTTTTTGCAATACCAATTAGATAGCATTATATAAAAATCCTGTTCTTCTTTTATTTTTGCATTTTTAAATAATTCTTTTAAGTCCCAATACGAATATTTTAAGAATTGTTCATATAAATTATTTTGTTTATTTGTTTTCTCTATACTAATTCCTCTAACAAATAATGCTTTTATTATATTATATCCTAATACACCTCTTATATAAATAATTCTCTGGAAGTGTACATCTTATGTTAAGGTTCAATTAAAGAGACTGTTAAAAAATGCATACAGAGAAATTT # Right flank : CACAGTAAAATAGCCATTCCTTATTTTCATTATAACCCTAAAACCCTTAATAATAAAGGCATCAACTGAAAATTTTCCAACCGTTTTTCAATTTTCATAAACTCAGCCAAAAAAGTGCCTCAATTCATTACATATCAATGCATTGAAGCACCTTCTATCTTCAAAGAGGTTGGAAAAATCAAAGTATTAAATCTTCAGTATTATTTTCATTTATCCCTAAAGTATCCTCCTCAAAACAGCTGTCATTCATAAGCTTTATTATTGTGACAAAATCCTTATCCTTTATAATCTTATTTAATTCACTCTTCAACTTTATCATTTTAGAAGTCGTTATAGCCCCTCTAAAAACAGAATTCTGATGGTGGTGGAAATATTTTTTGCATACCTTAAATACCTTATTTACCCTTTTCTCATTTACATCATAAAATACAAAAGCATAGTTGAAATTAAAATTTTTTCCCATAAAGCTCCTCCAATTATTACATCATATTTTTCAGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //