Array 1 583-944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000025.1 Clostridium acetobutylicum strain GXAS18-1 scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 583 30 100.0 38 .............................. GAAGTAACTTCTGGTTCAGAATGTGCTAAACAAAATAC 651 30 100.0 36 .............................. TAATAAGAGTTTTAAGAACTTCTTTTCCTTGTATGT 717 30 100.0 36 .............................. ATTAACTTATTTTTCCCTTGAAATTTTTTTACTATA 783 30 100.0 35 .............................. AGCTGTAATAAGCTTGAAGAAACTTGCCCTAAGTG 848 30 100.0 37 .............................. TCTTTTGTATTCTTTTAATCTTCCGTTCTTTATTTCC 915 30 93.3 0 .......C.......G.............. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.9 37 GTTGAACTTTAACATAAGATGTATTTAAAT # Left flank : ATACAACATATAAATTAGGCTGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTTCGAGCAACCCGTCTTTTAGCAAAGTCAATAAACCTAATACAACATATAAATTAGGCTGGAGGTTTGGGCGGAGCCCATTAGAATTATGAACTTCGAGCAACCCGTCTTTCAGCAAAGCCAATAAAATTAATAACAAGGTTTCGGGAATAATCATAAGCCAATATCAATCCAAGCAAAACTACTCTCGCTAATAACAAAGAATTTTTGTTGACAACTCAAAAATAGTTTGTTCATATCTTAATTTTAAGATAGAAATCTCCATCAATTTTTCCAACCTCAACAAAAATAAAAACCACTTTAAAGTGCCGCTATCAAAAGCCTAAGGGCTATTTTTTTATGTCTTTTTATGAATTTTGAAAACGCCTGGAAAAATTTTAACGAAAGCCTTTATTAATGCGGGCTAGAAGAGTATAATGAAATTAAGGAATGGCTTAAAACCGTTG # Right flank : TGTATTGTATTTTAAGGATTCTTGCCTTTGCTTTTCTTGTTGAACATGAATATACACCTTCAGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACTCGAAGCAACCCGTCTTTCAAAAAGGAAACAAAATTAATATGATATGTAAGTTGGCATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTCAAAGTAACTCGTCTTTCATCAAAGCAAATAAACTTAATACAACATATAAATTAGGCTGGAGGTTTGGGTGTTAGCCCATTAGAATCATGAACTTAGATTAACCCGTCTTCTAGCAAATTGAACTTTAATATATGGATTAAAGGAATTGTTATAAGTAAGCTAGGGAAATACTCTACATCTATTACACATAAACATGATATACAATATATTTTTAACATTATAAGTAGTGAGAGAGAGCAATATAACCGCCATTGGAGTAAACTACAAGTAAATAATGTACAATCGAAATACTACGTCAACAATTATGAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 488389-487898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000002.1 Clostridium acetobutylicum strain GXAS18-1 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 488388 30 100.0 35 .............................. TTTATTCTTATTTTTTTAAATATATTACTATTGCT 488323 30 100.0 37 .............................. AAACTATCATTTTTATTACATTTTCCATAACAATATA 488256 30 100.0 36 .............................. TTTTTAAAGTCTTCAAATAATTTTTTGGAATGATAT 488190 30 100.0 35 .............................. TACCTTCTAATCCATCTATTATTAACTTTCATATA 488125 30 96.7 35 .......T...................... ATATATACATGCCCTAGTCTATCCAGTATGCTTTT 488060 30 93.3 37 .......T........G............. ACCTCAACATGGTTGCATACTATTTCAGTTACATACT 487993 30 93.3 36 .C..............T............. TGACCAGTTCCTATAACTTTTGAGGGACTTAAAGCT 487927 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.9 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : TTGAGCGGAGCCCATTAGAATCATGAACCTCAAGCAACCCGTCTTTCGGCAAAGCCAATAAACTTAATACAACACATAAATTAGTATGGAGGTTTGGGCGTCATCCCATTAGGATCATGAACTTCGAGCAACCCGTTTTTAGGCAAAGGGAATAAGCAAAATAAAAGTATGAGTTTAGTGGAGAATTAGACAGCTTATTACAATTACAAGCAGATAGCACATCATCTCCTAGAAAGATTACTTTTTCCAATAACAAAGAGTCTTCGTTGATAACTTAAAACTAGTCTATTCATATATTAATTTTAGGATAGAAATCTCCATCAATTTTTCCAACCTCAACAAAAATGAAAAATACATCAAAGCCCCCATATCAAAAGCCTAAGGACTATTTTTATGTGTTTTTATGAATTTTCAAAACGTCTGGAAAAATTTCAACGAAAGCCTTTATTAATGCGGACTAGAGGAGTATAATGAAATTAGGGAATGGCTTAAAACCGTTG # Right flank : TTTATTGCATTAACACATTGTTGTCTCCATTTTCCAGTTGAACATTAACATACACATATGGAGGTTTGGGCGAGGCCCATTAGAATCATGAACTTCAAGCAACCCGTCTTTAATCAAAGCCAATAAACTTAATACAACACATAAATTAGGATGGAGGTTTTGGGCGGAGCCCATTAGAATCATGAATTAGTAAACCATATCGATTATTAAAGAACATTAGATATATTAATTATGAATATAAAAATACTACCCCAAAACAAAAATTAGAGTATAGAATCTAAGCCTTGTTTTGAGGTAGAGTAATTATCAATTAAGTATGCTATTATATATATTTTCTAACTAAAATGCCGTCTATAGATCCCATGGGCCTAATTTAGCCCAAGTTTGAGAACCAACCTTACCATCTGTAGCTAATCCGTTATATTTTTGGAATAATTCTACAAGGCATAGAGTATTGTAACCGAAGATGCCATCCTCGAAAGCAGATTCAGATCCAGTAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 490378-490153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000002.1 Clostridium acetobutylicum strain GXAS18-1 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 490377 30 100.0 36 .............................. GATCATCAACTCTTCCTTTAAATGCTAGATCCAATG 490311 30 100.0 35 .............................. TATGTTTTGAAAGTACGTTTTTTACATTTTCCCAA 490246 30 96.7 34 ................G............. CTTGTTGAAGGGTTTGGAGGACTTGGAGGAAAGT 490182 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 35 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : GGAAAACACCATCAATTTTTCCAACCTCAACAAAAATAAAAAGTATCTCAAAGCTTTTATATCAAAAGCCTAAGGCTTATTTTTTTATGCTTTTTTATGAATTTTCAAAACGCCTGGAAAAATTTTAAGGAAATCCTTTATTAATGCGGACTAGAGGAGTATAATAAATTTAAGGAATGGCTTAAAACCGTTGGTACACCTTCAGGGGTTTGGGCGGAGCCTATTAGAATCATAAACCTCAAGTAAACCGTCTTTTAGTA # Right flank : ATAAAACCGTGGATAACCATTGCACAAGGTGATGGCGTTGAACATGAATATACACCTTCAGGGGTTTAGGCGGAGCCCATTAGAATCATAAACCTAAAGCAACCCGTCTTTTATCAAATCAAATAAACTTAAGAACAAAGCTTTAAGCTAATTTGTAAACAGATAAGATCATATTTTTCAACAAAACTCCTCATTAATAACTCAAAACTCATATCTAATGATTAATAAACATTCTTAATATTTATTAATTTTAAGATAGAAATCTCCATTAATTTTTCCAACCTCAACAAAAATTAAAAGTGCATCAAAGCCTTGATATTAAAAGCCTAAGGGCTATTTTTTTATGCCTTTTTATAAAATTTCAAAACGCCTAAAAAAATTTTAAGGAAATCCTTTATTAATGCGGACTAGAGGAGTATAATGGATTTAAGGAATGGCTTAAAACCGTTGGTACATCTTCAGAGGTTTGGGCGGAGCCCATTAGAATCATGAACCCCGAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 18-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000031.1 Clostridium acetobutylicum strain GXAS18-1 scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 18 28 100.0 38 ............................ TAATGACAATCCTTGCACACTAATAATAGATTACTCGC 84 28 100.0 39 ............................ GACACATTTAAACTTATAAAAAAGTATGAAGATTTAGGT 151 28 96.4 0 ..............A............. | ========== ====== ====== ====== ============================ ======================================= ================== 3 28 98.8 39 TGAACTTTAACATATGATGTATTTAAAT # Left flank : GGCTTAAAACCGTTGGCT # Right flank : TTTTTCAGCATTTCCATCCGTCCACTGATCGTAGATAGTTGGACTTTAACATACACATATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTCAAAGTAACCCGTTTTTCGGCAAAGGAAATAATAAAAAAATAAAGGAAAATAGAAAATATGCTTTATGATTTTATGTTTGGTGTAGAAAGTACTTTTGAGGAAATAAAGGAATTTATAATTAAAGAAATAATTAAGGAGAATGTACTTACTAATGCAAAAGTTGTTATAAATTCAGAAAACCGTTTGAGTTTTATAAGTGAAGCTTTTAATTCATCACTTAGTGCAGGAGGACAAGGACTTTTATTCATGAGTGAAGATTATGATATAAATCTAAAGTATGGTATAGATTTTGATATTCATCCAGAATATATTAGATGGCCGGAGGATCTAATGACATTTGTAGGCTATATTATAAAAAAGTATTCAGGAGAGTTCTTATTAGAATCAAATGGAGATAATCCTAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACTTTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 3282-3638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000031.1 Clostridium acetobutylicum strain GXAS18-1 scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3282 30 100.0 34 .............................. TAAAAGTCCGGTGGAGCTATCGCATCAACTTTAA 3346 30 100.0 34 .............................. GATAATGCATATACACCGCCATTAGCACTTACAT 3410 30 100.0 35 .............................. AATGATGAATGTGCAATTATTATAGCATCGTAATC 3475 30 100.0 37 .............................. AATATATTGTAATTTATACATGCGTATAAATAGCCTG 3542 30 96.7 37 ..G........................... ATTAGATCATCAATATCCGAATTCTTTTTCTTTTTTT 3609 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTGAACTTTAACATAAGATGTATTTAAAT # Left flank : GATTGGGGTATACACAATTGGACATTTAGCCATTGCTACATTATTAAAGTTAGGTTTTAAGAAAGAAGAGTTGGATTGTTATAATAACCTTGACGAGTATGAAAAAAATATTGTTTTAAAATTGATTGAAGGATATGAATATGTAATATAAATCAAACAACAACGATTGAGCGTCAGCCCATTAGAAGCATGAACCCAAAGCAACCCGTCTTAATATAAAAGAAATATCTAAACTCAAAACAACTATTTGAAGATAACTTAAAACTCAGATCTAATAACTAATAAGCATTTCAGATATGTACAAGATAGAAATCCCCATCAATTTTTCCAACCTCAACAAAAATAGAAAGCACCTCGAAGCATTGGCACCAAAAGCTTAGGGGCTGTTTTTTTATACTCTTTTATAAAATATTAAAACGCCTGGAAAAATTTCAAGGAAATCCTTTATTAATGCGGACTAGAGGAGTATAATGAAAATAAGGAATGGCTTAAAACCGTTG # Right flank : TCTTTTACCTATAGATTTTACAGCATACTTACCTGTGTTGAACTTTAATATACACATATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTCCAAGTAACCCGTCTTTCAAAAAAGAAAACAAAATTAGTATGATATGTAAGTTGGCATGGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACTTCAAGTAACCCGTCTTTCGGCAAAGGGAATAAACAAAACAAAAGTATGAGTTTAGTCAGAACATTGGACAGACCATCACAATCACAAACCGATAACACATCATTAGTAACTAAAACCTCATATCTAATAATCAATAAATATTCTTATATGTATTAATTTCAAGATAGAAATCTCCATAAATTTTTCCAACCTCAACAAAAATTAAAAGCACATCAAAGCCTTGAAATTAAAAGCCTAAGGGCTGTTTTTTTATACATTTTTATAAAGTTTCAAAACGTCTGGAGAAATTTTAAGGAAACCCTTTAGTAATGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2613-2451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000032.1 Clostridium acetobutylicum strain GXAS18-1 scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2612 30 100.0 34 .............................. TTTTTAATACTTCCTTTCATCACCTTATATATAT 2548 30 100.0 38 .............................. TAAAAAGTTTGCCTTTTTTATTCTTGATTTCTACGCCA 2480 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 98.9 36 GTTTAACATTAACATAAGATGTATTTAAAT # Left flank : TCTGGAAAAATTTCAACGAAAGCCTTTATTAATGCGGACTAGAGGAGTATAATGAATTTAAGGAACGGCTTAAAAACGTTGGTACACCTTCAGGGGTTTGGGCTTTAGCCCATTAGAATCATTAACTTCAAGCAACATGTCTTCAAGCAAACCAAATAAAATTAATAACAAAGTTTCGGGCGCAATCATAAACCAATACCAATCTAGGCAAAACTGCTCTTTCCAATACTTAAAGATTCATCAGTAATAACTTAAAAGTCATAGCTAATGATTAATAAACATTCTTAATATTTATTAATTTTAAGATAGAAAACTCAATCATTTTTTCCAACCTTAGCAAAAATTAAAAGTGCCTCAAGGCATGGATAACAAAAGCCTAGAGACTGTTTTTTTATACTCTTTTATAAAAATTGAAAACGCCTGGAAAAATTTCAACGAAAGCCTTTATTAATGCGGGATAGAGGAGTATAATGAATTTAAGGAATGGCTTAAAACCGTTA # Right flank : AGCTTATATATTGCCGAGAAAGTGTTCCAGCGGCTTGTTGAACTTTAACATACACATATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACCTCAAGTAACCCGTCTTTCATCAAAGCAAATAAACTTAATACAACACATAAATTAGGCTGAAGGTTTGGGCGAAGCCCATTAGAATCATAAACTTAAAGCAACCCGTCTTTCAGTAAAGCCAGTAAATCTAATACAACATATAAATTAGGCTGGAGGTTTGGGCGGAGCCCATTAGAATTATAAACTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCTTTATTAATGCGGACTAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 3733-3572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000032.1 Clostridium acetobutylicum strain GXAS18-1 scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3732 30 100.0 36 .............................. ATGGCTTTGCTAGGTAAAGAAGTAATAAAGTTTATA 3666 30 100.0 35 .............................. TCCAATAAGTATTGTTTTATTCATTTCTATTACCT 3601 30 96.7 0 ................G............. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CTCAACAAAAATAAAAAGTACATCAAAGCCTTGATATTAAAAGCCCAAAGGCTATTTTTTATACATTTTTATAAAATCTCAAAACGCCTGGAAAAATTTTAAGGAAATCCTTTATTAATGCGGGCTAGAAGAGTATAATGGAAATAAGAAATGGCTTAAAACCGTT # Right flank : ATAAACCGTGAATAACCATTGCACAAGGAGATGGCGTTGAACATGAATATACACCTTCAGGGGTCTGGGCGGAGCCCATTAGAATCATGAACCCAAAGCAACCCGTCTTTCGGCAAAGCCAATAAACTTAATACAACACATAAATTAGTATGGAGGTTTTGGCGTCAGCCCATTAGAATCATGAACTTCAAGTAACCCGTCTTTCAGCAAAGAGAATAAGCAAAAGTATGAGTTTAGTCAGAACATTGGACAGGCCATCACAATCACAAACCGATAACACATTATTAGTAACTAAAACCTCATATCTAATAATCAATAAATATTCTTATATGTATTAATTTCAAGATAGAAATCTCCATCAATTTTTCCAACCTCAACAAAAATAAAAACCACTTTAAAACCTTGATATCAAAAGCCTAAGGGCTGTTTTTTTATGTGCTTTTATAAAATTTCAAAACGTCTGGAAAAATTTCAACGAAAGCCTTTATTAATGCGGACTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1-296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000040.1 Clostridium acetobutylicum strain GXAS18-1 scaffold40, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1 30 100.0 36 .............................. GAATAAATTACATCGGTTAATGAAATATGTAGGATA 67 30 100.0 37 .............................. GAAGTTATATCTTTAGTGTCGTTGTTAATGTAGGCAG 134 30 100.0 36 .............................. ATGAAACCAAGTATGTTGCTTATTGCAGCAAATCGA 200 30 100.0 37 .............................. AAATTTCTCCAAGGTAATAATGGGAAGGCTTGGATTA 267 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 37 GCTGAACTTTAACATATGATGTATTTAAAT # Left flank : | # Right flank : TTATTGATTGCCATGTTCTCCACATTTTTGGCACTTGTTGAACATTAACATACACGTATGGAGGTTTGGGCAGAGCCCATTAGAATCATGAAACCCAAGTAACCCGTCTTTTGGCAAAGGGAATGAGCAAAACAAAAATATGAGTTTAGTCAAAACATTAGATAGCTTATTACAATTACAAGCCGATATCACCTCATCTCATAGAAAGTTTACTCTTTTCAATAACAAAGAGTCTTCGTTGACGACTTAAAACTAGCCTATTCATGCACTAATATCAAGATAGAAAACCCCATTAATTTTTCCAAACTCAACAAAAATAAAAAGTACATCAAAGCCTTGATATCAAAAGCCTAAGAACTGTTTTTTTTATACATTTTTATGAATTTTGAAAACGCCTGGAAAAATTTTAAGGAAATCCTTTATTAATGCGGTCTAGAAGAGTATAATGAATTTAAGGAATGGCTTAAATTCGTTGGTTGAACCTTAACATAGGATGTATT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAACTTTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 771-1257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000040.1 Clostridium acetobutylicum strain GXAS18-1 scaffold40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 771 30 100.0 36 .............................. ATTCTTTCAACTTGTATTTCTTTATATCTTTTTAAA 837 30 100.0 35 .............................. CCTTTCTTAAAGATGTAATTTCCTATAGAATCTTT 902 30 100.0 36 .............................. TTCCATGTCTTGCATCCTCTACAATGTTTTATTATA 968 30 86.7 35 .C.....A.......GA............. AAGAATCTATTATCTTCATCTATCATATAGGCAGT 1033 30 86.7 33 ......TAG.......A............. ACTTAAAATATAATAATTACTTAGTCTTTCTTT 1096 30 90.0 35 ...A...T........A............. GATTGTATTTCTGTTTTAGTAGAACCAGTATTATC 1161 30 93.3 37 .......T........A............. TGTACGGAACACTTAGCTTTAATTTTTTCTTTGCAGG 1228 30 90.0 0 .......T.......GA............. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 93.3 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AACTTTAACATATGATGTATTTAAATTATTGATTGCCATGTTCTCCACATTTTTGGCACTTGTTGAACATTAACATACACGTATGGAGGTTTGGGCAGAGCCCATTAGAATCATGAAACCCAAGTAACCCGTCTTTTGGCAAAGGGAATGAGCAAAACAAAAATATGAGTTTAGTCAAAACATTAGATAGCTTATTACAATTACAAGCCGATATCACCTCATCTCATAGAAAGTTTACTCTTTTCAATAACAAAGAGTCTTCGTTGACGACTTAAAACTAGCCTATTCATGCACTAATATCAAGATAGAAAACCCCATTAATTTTTCCAAACTCAACAAAAATAAAAAGTACATCAAAGCCTTGATATCAAAAGCCTAAGAACTGTTTTTTTTATACATTTTTATGAATTTTGAAAACGCCTGGAAAAATTTTAAGGAAATCCTTTATTAATGCGGTCTAGAAGAGTATAATGAATTTAAGGAATGGCTTAAATTCGTTG # Right flank : TCCCAAGTTGGAGCTTCTTCGATTTTTGCTAAATAAGTTGAACATGAATATACACCTTCAGGGGTTTGGGCGTTAGCCCATTAGAATCATGAACTACAAAGTAACCCGTCTTTCAGCAAAGCAAATAAACTTAATACAACATATAAATTAGGTTGGAGGTTTGGGCGGGGCCCATTAGAATCATGAACCCAAAGTAACCCGT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 218-575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000027.1 Clostridium acetobutylicum strain GXAS18-1 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 218 30 100.0 35 .............................. TAGATCATGCTGTAATTACCGTCTGATAAATCTTT 283 30 100.0 38 .............................. CGGATAGACGCAAAGATAAGGTTAAGGCTAGAATAAAC 351 30 100.0 34 .............................. CAAGGACTTGGATTAACAAGTAGTCCGGGTTTTG 415 30 100.0 36 .............................. TATTTAATATTTACCTCCATTACACTAGATGAAAGC 481 30 96.7 35 .......T...................... AATTGCAGCTATAGCCAAATGACACCCTAGTTTTA 546 30 93.3 0 ........G.......T............. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.3 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CTCAATATCTATTAATTTCAAGATAGAAAACACCATCATTTTTTCCAACCTCAACAGAAATAAAAACCACTTAAAAGCCTTGCCATTAAAAGCCTAAAGGCTATTTTTTTACACATTTTTATAAAACATCAAAATGCCTGGAAAAATTTCAAGGAAATCCTTTATTAATGCGGACTAGAGGAGTATAATGAAAATAAGGAATGGCTTAAAACCGTTGG # Right flank : TAACTCAGCTCCTGCAAGATCATTAGGGGAACAATGTAGTTGAACAGTAACATACACATCTGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTTAAAGCAACCCGTCTCATAGCAAAGGGAATAAGCAAAACAAAAGTATGAGTTTAGTCAGAACATTGGACATGTTATCAGAAACAGATGACACATTATCTATTAATTCCAAGATAGAAAAACACATCAATTTTTCCAACCTCAACAAAAATAAAAAGTACCTTAAAGCTCTGATATCAAAAGTCTAAGGGCTGTTTTTTTATGCATTTTTATAGAACTTCAAAACGCCTGGAAAAATTTCAGGGAAATCCTTTATTAATGCGGATTAGAGGAGTATAATGAAAATAAGGAATGGCTTAAAACCGTTGGTTGAACAGTAACATATGATGTATTGAAATGGACAAAAAACTAGGGTTGTAAAGACAAAAGATTATGGTTGAACAGTAACATATGATGTATTGAAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 977-1466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000027.1 Clostridium acetobutylicum strain GXAS18-1 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 977 30 100.0 37 .............................. GGACAAAAAACTAGGGTTGTAAAGACAAAAGATTATG 1044 30 100.0 37 .............................. ATTTAATTTAAAGAATGGGTTTACTTTTAATGTAGAA 1111 30 100.0 35 .............................. TCAATAGTACATCCTCGAGAAGTTTTTAAAACTGC 1176 30 100.0 35 .............................. TTAAAGTGTTTCAATAAACATAGTCCACATTCTGT 1241 30 90.0 36 ........T.......A........T.... AATTCAGTCCTAGCGTCAAAGTGTAATAATTCCCCT 1307 30 93.3 35 ........T.......A............. TAGTAACTAATTTAGACATATCTTCATTGGACATA 1372 30 86.7 35 ........T......GA...........G. AAGCATTTTGATCTAAAACTTTTTTATAGTCTGTC 1437 30 90.0 0 ........T.......G........T.... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 95.0 36 GTTGAACAGTAACATATGATGTATTGAAAT # Left flank : AAGCGTTGAACTTTAACATAAGATGTATTTAAATAATTGCAGCTATAGCCAAATGACACCCTAGTTTTAGTTGAACAGTAACATATGATGTATTTAAATAACTCAGCTCCTGCAAGATCATTAGGGGAACAATGTAGTTGAACAGTAACATACACATCTGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTTAAAGCAACCCGTCTCATAGCAAAGGGAATAAGCAAAACAAAAGTATGAGTTTAGTCAGAACATTGGACATGTTATCAGAAACAGATGACACATTATCTATTAATTCCAAGATAGAAAAACACATCAATTTTTCCAACCTCAACAAAAATAAAAAGTACCTTAAAGCTCTGATATCAAAAGTCTAAGGGCTGTTTTTTTATGCATTTTTATAGAACTTCAAAACGCCTGGAAAAATTTCAGGGAAATCCTTTATTAATGCGGATTAGAGGAGTATAATGAAAATAAGGAATGGCTTAAAACCGTTG # Right flank : TAATACAGTTTTTAAAGTACTTAGTACGCCTTGCGCGTTGAACATGAATATACACCTTCAGGGGTTTGGGCGGATCCCATTAGAATCATGAACCCAAAGCAACCCTTCTCATAGCAAAGTGAATAAGCAAAACAAAAGTAGGAGTTTAGTCAGAACATTGGACATGTTATCACAAACAGATGACATCTTATATATTAATATCAAGATAGAAATCCCTATCAATTTTTTCAACCCCAACAAAAATAAAAAGCACCTCAAAGCATTGGAACCAAAAGCTTAGAGGCTGTTTTTTTATACTCTTTTATAAAACATCAAAATGCCTGGAAAAAATTCAAGGAAATCCTTTATTAATGCGGACTAGAGGAGCATAATAAATTTAAGGAATGGCTTAAAACCGTTGGTACACCTTCAGGGGTTTGAGCAGAGCCCATTAGAATCATGACCCCCAATCAATCCGTCTTTTATCAAATAAAAATATACCGACTAAAATTATCAGCGAA # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATATGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 5226-5385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000027.1 Clostridium acetobutylicum strain GXAS18-1 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5226 29 100.0 37 ............................. ATCTTTTACTCTCTTTTATAATTTGTTTTATATGTTG 5292 29 100.0 36 ............................. GGAATTATCGATATATGATCCTGAAGCGTTTTATGG 5357 29 93.1 0 ..............GA............. | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 97.7 37 TTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTCATAATAAAAGCCTACAGGTGATTTTTTTATGTGCTTTATAAAGATTTCAGGGAAATTATTTGTTAATGGTGATAGGAATTCAATAAATTTAATACAGCATAAAAATAGAAGTTTTAACCACCTATAACAATTACGGACTTACAAGAACTCATTAACTATCAAACTAATGATTCCAATGCCAAAGAATTTCTATTTACAACTCAAAAATAGTTTATTCATACACTAATTTTAAGATAGAAAACCCCATCAATTTTTCCAACCTCAACAAAAATAAAAAGTACATCAAAGCCTTGATATTAAAAGTCTAAGAACTGTTTTTTTATACATTTTTATGAATTTTGAAAACGCCTGAAAAAATTTTAAGGAAATCCTTTATTAATGCGGGCTAGAAGAGTATAATGAATTTAAGGAATGGCTTAAAAACGTTGGTACACATTCAGGGGTTTGGGCGGAGCCCATTAGAATCATGAACCTAAAGCAACCCGTCTTTTAATAAA # Right flank : TAATATCAGGGCTGCCATATAAAGATTTTAAGCATATTGAACATTAACATACACATATGGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACCCAAAGCAACCCGTCTTTTAGCAAAGCCAATAAACCTAATACAACATATAAATTAGGATGGAGGTTTGGGCGTCAGCACATTAGAATAATAAACCCAAAGCAACCCGTCTTTTAAAAAAGGGAATAAGCAAAACAAAAGTATGAGTTTAGTCAAAACATTAGATAGCTTATTACAATTACAAGCCGATAGCACCTCAGCTCCTAGAAAGTTTACTCTTTTCAATAACAAAGAGTCTTTGTTGACAACTTAAAACTAGCCTATTCATACACTAATATCAAGATAGAAAACCCAATCAATTTTTCCAACCTCAGCAAAAATAAAAACTACTTTAAAGTGTTGATACCAAAAGTCTAATGGCTATTTTTTTATGTGCTTTTATAAAATTTCAAAACGCCTGGAAAAATTT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 6245-5953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000027.1 Clostridium acetobutylicum strain GXAS18-1 scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 6244 30 100.0 35 .............................. TATCACTTTGCAGATAATTCTGGTAATCCTGTAGG 6179 30 100.0 36 .............................. CGGATATTTAGACTTTAGTACTGTTGTAAGCAACGG 6113 30 96.7 36 .............C................ AAGAAGAGAAACAAAAGAGGTTAGTATTATGGATTT 6047 30 93.3 35 .............C........G....... ACATTCCCAAAAACTTTGGCTGCTCCGTATACTTG 5982 30 93.3 0 .............C........G....... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.7 36 ATTTAAATACATCTTATGTTAATGTTCAAC # Left flank : ATTTAAATACATCCTATGTTAATATTCAACCAACGTTTTTAAGCCATTTCTTAAATCTATTATACTCCTCTATACCGCATTAATAAAGGATTTCGTTAAAATTTTTCCATGCGTTTTGGAAATTCATAAGAAATCATAAAAAAATAACTCTTAGGCTTTTAACATCAAGGCTTTAAAGTGTCTTTTATTTTTGTTGAGGTTGAAAAAATTGATGGAGGTTTCTATCTTGGAATTAATTGATATTATCTGTTTGCAAATTAGCTTGAAACTTTGTTATTAATTTTATTTGATTTGATAAAAGACGGGTTTCTTTAGGTTTATGATTCTAATGGGCTCCGCGCAAACCTCCATGCCAATTTACATGTTGTATTAAGTTTATTTGATTTGCTGAAAGATGGGCTACTTTGGATTCATGATTCTAATGGGCTCCGCCCAAACCTCCATATGTGTATGTTAATGTTCAACTTTTTAAGGCACCTTTGACTAGCAGTGAAAAACTT # Right flank : CAACGTTTTTAAGCCATTCCTTAAATCTATTATACTCTTCTATCCCGCATTAATAAAGGCTTTCGTTGAAATTTTTCCAGGCGTTTTGAAATTTTATAAAAGCACATAAAAAAATAGCCATTAGACTTTTGGTATCAACACTTTAAAGTAGTTTTTATTTTTGCTGAGGTTGGAAAAATTGATTGGGTTTTCTATCTTGATATTAGTGTATGAATAGGCTAGTTTTAAGTTGTCAACAAAGACTCTTTGTTATTGAAAAGAGTAAACTTTCTAGGAGCTGAGGTGCTATCGGCTTGTAATTGTAATAAGCTATCTAATGTTTTGACTAAACTCATACTTTTGTTTTGCTTATTCCCTTTTTTAAAAGACGGGTTGCTTTGGGTTTATTATTCTAATGTGCTGACGCCCAAACCTCCATCCTAATTTATATGTTGTATTAGGTTTATTGGCTTTGCTAAAAGACGGGTTGCTTTGGGTTCATGATTCTAATGGGCTGACGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAATGTTCAAC # Alternate repeat : ATTTAAATACATCCTATGTTAAGGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 7154-6716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000027.1 Clostridium acetobutylicum strain GXAS18-1 scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 7153 29 100.0 37 ............................. CTAAACATAAGTTTAGATGAAATGGAAGAAGCTTATT 7087 29 100.0 37 ............................. CAAGATTCGGAGGGTACACAAGCGATTTTAATGGTTG 7021 29 100.0 35 ............................. CGATTTCCTGAAGGGGTAAGACATCAAAAAACATC 6957 29 96.6 118 .............C............... TTTACTAAAAGACGGGTTGCTTTGGATTCATGATTCTAATGGGCTCCGCCCAAACCTCCATATGTGTATGTTAAAGTTCAACTATCTACGATCAGTGGACGGATGGAAATGCTGAAAA 6810 29 93.1 37 .............T........A...... CTAATAGGCACTTTACAGTACAAGCGAAAAACTACAG 6744 29 93.1 0 .............C.........A..... | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 6 29 97.1 53 ATTTAAATACATCGTATGTTAATGTTCAA # Left flank : TTTAAATACATCATATGTTACTGTTCAACCAACGGTTTTAAGCCATTCTTTATTTTTATTATACTCCTCTAGTCCGCATTAATAAAGGCTTTTGTTGAAATTTTTCCAGACGTTTTGAAAATTCATAAATCGGCATAAAAAAATAGCTCTTAGACTTTTGATATCAAGGCTTTTAAGTGGTTTTTACTTCTGTTGAGGTTGGAAAAAATGATGGGGATTTCTATCTTGATATTGATTGATATTATCTGTTTGCAAATTAGCTTGAAACTTTGTTCTTAATTTGATTTGCTTTGATTAAAAACGGTTTATTTGAGTTTATAATTCTAATGGAATCCGCCCAAACCTCCATGCCAACTTACATATCATACTAATTTTGTTTTCTTTTTTGAAAGACGGGTTACTTGGAGTTCATGATTCTAATGGGCTCCGCCCAAACCCCTGAAGGTGCATATTCATGTTCAACAGTTGTATTTAGAACTTGGTAAAACTGAATGTATCAA # Right flank : CCAACGTTTTTAAGCCATTTCTTAAATCTATTATACTCCTCTATACCGCATTAATAAAGGATTTCGTTAAAATTTTTCCATGCGTTTTGGAAATTCATAAGAAATCATAAAAAAATAACTCTTAGGCTTTTAACATCAAGGCTTTAAAGTGTCTTTTATTTTTGTTGAGGTTGAAAAAATTGATGGAGGTTTCTATCTTGGAATTAATTGATATTATCTGTTTGCAAATTAGCTTGAAACTTTGTTATTAATTTTATTTGATTTGATAAAAGACGGGTTTCTTTAGGTTTATGATTCTAATGGGCTCCGCGCAAACCTCCATGCCAATTTACATGTTGTATTAAGTTTATTTGATTTGCTGAAAGATGGGCTACTTTGGATTCATGATTCTAATGGGCTCCGCCCAAACCTCCATATGTGTATGTTAATGTTCAACTTTTTAAGGCACCTTTGACTAGCAGTGAAAAACTTATTTAAATACATCTTATGTTAATGTTCAA # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.74, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCGTATGTTAATGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 7625-7986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000027.1 Clostridium acetobutylicum strain GXAS18-1 scaffold27, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7625 30 90.0 37 .......AG.......T............. AAATATGAATGAGAGTATTCTGGAGCTATGTCTATAT 7692 30 90.0 37 .......AG.......T............. TGTCAAATATATAACAAATTTACATTTGACATATTTC 7759 30 100.0 36 .............................. TTAGATGTCCATCCTGTTTCTTTATAAATCATTCCT 7825 30 96.7 36 ......................G....... CTTGTAAATCCGTTTTTTACTAACCCATTTACAAAA 7891 30 100.0 36 .............................. GGATCTTTACTACCTAAATTATCAAAAAGGCTATCT 7957 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.1 37 GTTGAACTTTAACATAAGATGTATTTAAAT # Left flank : TTGAACATTAACATACGATGTATTTAAATTTGATACATTCAGTTTTACCAAGTTCTAAATACAACTGTTGAACATGAATATGCACCTTCAGGGGTTTGGGCGGAGCCCATTAGAATCATGAACTCCAAGTAACCCGTCTTTCAAAAAAGAAAACAAAATTAGTATGATATGTAAGTTGGCATGGAGGTTTGGGCGGATTCCATTAGAATTATAAACTCAAATAAACCGTTTTTAATCAAAGCAAATCAAATTAAGAACAAAGTTTCAAGCTAATTTGCAAACAGATAATATCAATCAATATCAAGATAGAAATCCCCATCATTTTTTCCAACCTCAACAGAAGTAAAAACCACTTAAAAGCCTTGATATCAAAAGTCTAAGAGCTATTTTTTTATGCCGATTTATGAATTTTCAAAACGTCTGGAAAAATTTCAACAAAAGCCTTTATTAATGCGGACTAGAGGAGTATAATAAAAATAAAGAATGGCTTAAAACCGTTG # Right flank : TCTACTCATATAGAGCTTGTTCATTATTTCTGAAACTGTTGAACATTAACATACACCTATGGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACTCCAAGTAACCCGTCTTTCGGCAAAGGGAATAAACAAAACAAAAGTATGAGTTTAGTCGGAACATTGGATATGTTATCACAAACAGATGACATCTTATATATTAATATCAAGATAGAAATCTCCATCAATTTTTCCAACCCCAACAAAAATAAAAAGCACCTCAAAGCATTGGCACCAAAAGCTTAGAGCTTATTTTTTTATGCCTTTTTATAAAATTTCAAAACGCCTGGAAAAATTTCAGGGAAAGCCTTTATTAATGCGGGATAGAGGAGTATAATGGATTTAAAGAATAGCTTAAAGACGTTGGTTGAACATTAACATACGATGTATTTAAATTCCATGATGAGGTCCATAACGTTTCTTGAACTTAAGTTGAACATTAACATACGATGTATTTAAATCTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACAGTAACATATGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 8388-8546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000027.1 Clostridium acetobutylicum strain GXAS18-1 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 8388 30 100.0 35 .............................. TCCATGATGAGGTCCATAACGTTTCTTGAACTTAA 8453 30 100.0 34 .............................. CTGTCTTCTGCAATTACATAACTATATTTTTCCT 8517 30 93.3 0 .......T........A............. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 97.8 35 GTTGAACATTAACATACGATGTATTTAAAT # Left flank : AAAGTTGAACTTTAACATAAGATGTATTTAAATGGATCTTTACTACCTAAATTATCAAAAAGGCTATCTGTTGAACTTTAACATAAGATGTATTTAAATCTACTCATATAGAGCTTGTTCATTATTTCTGAAACTGTTGAACATTAACATACACCTATGGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACTCCAAGTAACCCGTCTTTCGGCAAAGGGAATAAACAAAACAAAAGTATGAGTTTAGTCGGAACATTGGATATGTTATCACAAACAGATGACATCTTATATATTAATATCAAGATAGAAATCTCCATCAATTTTTCCAACCCCAACAAAAATAAAAAGCACCTCAAAGCATTGGCACCAAAAGCTTAGAGCTTATTTTTTTATGCCTTTTTATAAAATTTCAAAACGCCTGGAAAAATTTCAGGGAAAGCCTTTATTAATGCGGGATAGAGGAGTATAATGGATTTAAAGAATAGCTTAAAGACGTTG # Right flank : TTTTCAGCATTTCCA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATACGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1192-1355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWL01000041.1 Clostridium acetobutylicum strain GXAS18-1 scaffold41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1192 30 100.0 36 .............................. GGACTACCGTCCCATATCAAAGCACTTTTTTCATCT 1258 30 100.0 38 .............................. ATGCTTTAAAGCGTCTGCTTCTTTTCCCAAAATATTAT 1326 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 ATTTAAATACATCTTATGTTAAAGTTCAAC # Left flank : ATTTATTAATGAGGAATCTTTGGGTGTTAAAAATAACAGTTTTTAAAAAATATTATATTATCTGTTATTTAGACTTAAACTTTGTTATTAATTTTATTGGATTTGTTAGAATACGGATTAATTGGGTTCATGATTCTAATGGGCTAACGCCCAAACCTCCAACCTAATTTATATGTTGTATTAGGTTTATTGGCTTTGCTAAAAAACGGGTTGCTTGGGGTTCATGATTCTAATGGGCTTCGCCCAAACCTCCATACTTAACTTACATATCATATTAATTTTGTTTTCTTTTTTTAAAGACGGGTTACTTGAAGTTCATGATCCTAATGGGCTTATGCCCAAACCTCCATGCCTAATTTATATGTTGTATTAAGTTTATTTGCTTTGCTGAAAGACGGGTTACTTGGAGTTCATGATTCTAATGGGCTCCGCCCAAACCTCCATATGTGTATGTTAAAGTTCAACGAGGGTATACTTGTTGGGAAAAACACTTTTTTATG # Right flank : CAACGGTTTTAAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAAGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //