Array 1 14109-14330 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820408.1 Neisseria sp. HMSC065C04 Scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14109 35 69.4 19 TGGA...-A.T....A.....G.....A.T...... CCGCCTCGTGTCAATAACT Deletion [14163] 14163 36 97.2 30 .C.................................. AGGTTACAGGTATTTGTGCAACGGACAATG 14229 36 100.0 30 .................................... AACGGAGCTATTTTTGGTGAAGGCGATACG 14295 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.7 27 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTATT # Right flank : TCTGCCAAATCCCCGCATGTCAAATTACGGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCACTACACTCAACCCGCCAGCCCGTCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATCAAGCCATGTTTTATTTGGAAGCTGTCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATGACACAGGTGGTTATAACTTTTGTCAGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTT # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.44, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 2 14881-15180 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820408.1 Neisseria sp. HMSC065C04 Scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14881 36 100.0 30 .................................... ATGACTTAGAAGGTATCGAAGAAGAAGTAC 14947 36 100.0 30 .................................... AAAAGATAGCAGCCAAGTACAACAGATTAA 15013 36 100.0 30 .................................... GATGAATCTTGGATTATGTTAACAGCAACA 15079 36 97.2 30 ..................................C. AATGACAAAAAACGGTAGCAGTCGAGACGT 15145 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCACTACACTCAACCCGCCAGCCCGTCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATCAAGCCATGTTTTATTTGGAAGCTGTCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATGACACAGGTGGTTATAACTTTTGTCAGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTGGCGAGGGCGTGAAAGACGATATTGTCG # Right flank : TCAATTGCTTTTTGCTCTTCGTGTATATACTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCCAAATGAACCATATAATCAAATTCATCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGCTGGTTTTCACTCCCAAGCGCACGCCTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAGAATGGGTGTTGATGGGGCGCGTGAAACCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCGGATGAGCTATTAGGGCTTGATGATTGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 15340-15639 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820408.1 Neisseria sp. HMSC065C04 Scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15340 36 91.7 30 NNN................................. CCCAAATGAACCATATAATCAAATTCATCT 15406 36 100.0 30 .................................... CGCTGGTTTTCACTCCCAAGCGCACGCCTA 15472 36 100.0 30 .................................... AGAATGGGTGTTGATGGGGCGCGTGAAACC 15538 36 100.0 30 .................................... GCGGATGAGCTATTAGGGCTTGATGATTGA 15604 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AGTGCTACAATTTGGCGAGGGCGTGAAAGACGATATTGTCGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATGACTTAGAAGGTATCGAAGAAGAAGTACGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAAAGATAGCAGCCAAGTACAACAGATTAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGATGAATCTTGGATTATGTTAACAGCAACAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACACTAATGACAAAAAACGGTAGCAGTCGAGACGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAATTGCTTTTTGCTCTTCGTGTATATACTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAGCCCCTAAATTACTCATCGATACACCCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACTTCAACGGGAAACCCTTATTCTATAGGGGTTTCCCGTTTTATTTTGTCTAAAAAAGCAGCCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGATTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGGAACTGGCGG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //