Array 1 715680-713910 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOA01000010.1 Listeria monocytogenes strain NRRL B-33384 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 715679 29 100.0 36 ............................. TTAATAGCTTCCATAATTTCATTTACAGTAACCTCT 715614 29 100.0 36 ............................. AGATTTTATGACTATCACTAGCTTTTACTTCCTGCA 715549 29 100.0 34 ............................. GTTACTTCTATAGAAGAAAAGGTGCTTGGCATTA 715486 29 100.0 36 ............................. TAGAGAGTTCAACGTAACTTGGGATGGTAACTACAC 715421 29 100.0 35 ............................. AAAGTAAATGCGTTAGAAACGTCATCTCAGACACG 715357 29 100.0 36 ............................. TCTCGTATATCAATTCTCTGTCGCTCAAATCTTCAT 715292 29 100.0 34 ............................. GTACTTATTGTGATCATACACAAGTATCGCTGTC 715229 29 100.0 36 ............................. ATTTATATTATAGTAGTTTCCTTCTAAAAAATCAAC 715164 29 100.0 36 ............................. CATTGCAAACTGGACGGCATTATATGCGACGGCGCT 715099 29 100.0 38 ............................. GACGATTGGACAGCTCCATTTGGAGGGACAGAGTTCAC 715032 29 100.0 34 ............................. CTGCTTTTGTAATTCCGTTAATAAGGTCTGCAAA 714969 29 100.0 35 ............................. TTGCTAGCAGCAATTGATTTTGTCAATACCACCGG 714905 29 100.0 34 ............................. AACATTTAAATCACTCCTTAATTGGTTACAGATG 714842 29 100.0 35 ............................. ATGTCCACGTGATTGAGTCATCCGTGAACGTCGAA 714778 29 100.0 36 ............................. CCGGTTTATAGACTAAAGGGGAGTACGCTGCAACTA 714713 29 100.0 35 ............................. ACTTCCTCTGCCAAAGTGCAACGCATTTCTACATC 714649 29 100.0 37 ............................. CCACATCGTTTTTTGCTTTGATCACTTTCCAACCGTT 714583 29 100.0 36 ............................. GTTGGAAAAGTTAAAGACTTAATAGCGAAAAACAAT 714518 29 100.0 37 ............................. TTCTTAATCGCTTTTGCTAGTTGAACCATGATAGAAA 714452 29 100.0 34 ............................. AACCTGAAAACAAATGACTATCAAATGCTATATC 714389 29 100.0 34 ............................. ATGGCTTTTAGTCCCGGCTGAATCGCATCCCATG 714326 29 100.0 36 ............................. TTGTTCCACCTCCAATCTAACCATATAATGGTACTG 714261 29 100.0 35 ............................. GTCGAAGGCGGCAATGAGTTGCTTGCCAGTTTAAA 714197 29 100.0 35 ............................. CTGAAAAGGACTGGAAGAATCTTCAATTCATTATA 714133 29 100.0 34 ............................. CTTGGACAATTGTTTGTTTTGTTGGTACAACGAT 714070 29 100.0 37 ............................. GTTAGTAAATTGTTCGAACAAACCAGTTCCGCCTAGG 714004 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 713939 29 93.1 0 .......................C....C | A [713914] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.8 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATAATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTCCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 732795-732506 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOA01000010.1 Listeria monocytogenes strain NRRL B-33384 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 732794 29 100.0 35 ............................. GTGAACCCCATTGCCAGTAAAGTAAATCCATCACG 732730 29 100.0 37 ............................. AAAGCAGTAAAGAAAGCAGTAACGGGTAATGGTAATT 732664 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 732598 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 732534 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 94.5 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCAACATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAACTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTCACTA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //