Array 1 274544-273724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLV010000001.1 Aerococcus urinae isolate Au-04-B04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 274543 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 274482 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 274421 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 274360 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 274299 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 274238 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 274177 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 274116 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 274054 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 273993 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 273932 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 273871 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 273810 28 93.1 32 ......................A-..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 273750 27 86.2 0 ....................--....TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : GTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 295535-293494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLV010000001.1 Aerococcus urinae isolate Au-04-B04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 295534 29 96.6 32 ............................A TGGTTTGAATAATTTCAAAAATTTGTTGGATG 295473 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 295412 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 295350 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 295289 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 295228 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 295167 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 295106 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 295045 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 294984 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 294923 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 294862 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 294801 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 294740 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 294679 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 294618 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 294557 29 96.6 31 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCG 294497 29 89.7 32 AC..........................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 294436 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 294375 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 294314 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 294253 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 294191 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 294130 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 294069 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 294008 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 293947 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 293886 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 293825 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 293765 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 293704 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 293643 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 293583 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 293522 28 75.9 0 ........-..C......A.T..T...TG | A [293497] ========== ====== ====== ====== ============================= ================================= ================== 34 29 97.4 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //