Array 1 1303729-1299965 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT992557.1 Lactococcus piscium strain CMTALT02 chromosome CMTALT02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 1303728 28 100.0 35 ............................ TGCAAATAAACATGCTATAAAATTTGTAATCATGA 1303665 28 100.0 33 ............................ TCGTGATGCTGAGTTAGCAATTGGTACATTAAC 1303604 28 100.0 33 ............................ TAGCTTAAAAGGCATAAACACTGCAATGAGTGC 1303543 28 100.0 33 ............................ TTGCTTCAGGCAATGCATTATCCATAACTGCTA 1303482 28 100.0 33 ............................ TGGGCAAGCTGTCAATATGTTTTCAGCCTTAGA 1303421 27 96.4 33 .................-.......... CAGTAATAAAGTAACGCTAAAAAACTATTTTTG 1303361 28 100.0 33 ............................ TGTCAAAAATATATTTAGCATCGTTATTCACGA 1303300 28 100.0 34 ............................ TTAGGTTGTTTTGTCTCGTTAAGTAGCTCAAGAT 1303238 28 100.0 33 ............................ TACTGATACTCAATATATGAGCGGAAGTGCAAA 1303177 28 100.0 33 ............................ TAATTCGTGTCCCCCTCTTTTACAATGCCAGAC 1303116 28 100.0 33 ............................ AATCGTCTGAGTAGTGCATCGCATCAGGCAAGC 1303055 28 100.0 33 ............................ TTAAGTGGTTCAGCAGTACAATCAAATGTAGCT 1302994 28 100.0 33 ............................ TTATCAATTCTTACAATCGTACCAGCAGGCAGT 1302933 28 100.0 33 ............................ TACTGGCCAAACTCATGTAGTTCAGTACGGTGA 1302872 28 100.0 33 ............................ TCCTCAACTTCAGACAGTCCGGCTTTTGTTTGT 1302811 28 100.0 33 ............................ CAAGCGAGTATGTTTGATATAAACAAAACTATT 1302750 28 100.0 33 ............................ TCTCGTATAAGATTTGTTTTTAGGATTAAGTTG 1302689 28 100.0 33 ............................ CTTCTTTTACTGACCACCCATACCGTTTCCAAG 1302628 28 100.0 33 ............................ CATCACCTCCATATTCTTGATAGTCCTTAATTG 1302567 28 100.0 33 ............................ CGATTATGTAGTCATCTATCTTAGATCCACTTT 1302506 28 100.0 33 ............................ TCACACAAGTTATCTTTGAAGCAACAAGCGCAA 1302445 28 100.0 33 ............................ TGATAGGGGTATAGGGATAGTCATGACTACTGT 1302384 28 100.0 33 ............................ CACTTACTTGCCGAGTATATCAATCTGGCGCTG 1302323 28 100.0 33 ............................ CTACTCAAACTTATGATGCAACAGCTCAGACGT 1302262 28 100.0 33 ............................ TTACCGAATGAAGCTTGTTCAATTGATGCATCA 1302201 28 100.0 33 ............................ TACCAGGATTATCTAGCCGCCAGTAGTTTATAC 1302140 28 100.0 33 ............................ CTCGCAAAGTTTTAAAGCGGTTATCATTGACCA 1302079 28 100.0 33 ............................ TTTCTTCATACTGTTTAGCATGTTCTTCAATAA 1302018 28 100.0 33 ............................ ATAGTAATCAATATTGCTTCAACAATCGGTACA 1301957 28 100.0 33 ............................ TGGCCAGCAAGCTACACAGAAACAGTCAAGTCC 1301896 28 100.0 33 ............................ CAACAACCATTACTTCAACTACTAATACCGACG 1301835 28 100.0 33 ............................ TGATTGCCTGTTGGCGTTCTTCCTCAGATAACT 1301774 28 100.0 33 ............................ TCCTTTTTCATACAGCCAACTATCTCCATAATT 1301713 28 100.0 33 ............................ TATATTGAAGAAAGGAGTAAAAATGAGAAGCAA 1301652 28 100.0 33 ............................ TCGCAGACTAGCCATTTTAGTATCAAACACTTG 1301591 28 100.0 34 ............................ TGACGACCTGGCAAACTTAACAGCTAGTTTAAAG 1301529 28 100.0 33 ............................ TACTAAACACTCTCCTGTTTCTCTATTCACAGG 1301468 28 100.0 33 ............................ CAGACCTTCAACTGCATCTTTTACTTTTTCGTT 1301407 28 100.0 33 ............................ CGCTATTTTATCCATCACGACTAGCCAACTTCC 1301346 28 100.0 33 ............................ TCAACTGGACTCGTGCTTCTGAACTCGGAGATA 1301285 28 100.0 33 ............................ CTGACATCTATTCTAAAAGGCAGATTGAGGTAT 1301224 28 100.0 33 ............................ TTGATAATGTACAATATGCAATTGACCACAATA 1301163 28 100.0 33 ............................ CGCTACTGGCGTAATCGACCCAATAACTGGACT 1301102 28 100.0 33 ............................ TAAATCGTTTCCCCAGTCCCGTTCCCGCCAAGT 1301041 28 100.0 33 ............................ TATGACGGAGGACAGGACAAATGAGTAAATCAG 1300980 28 100.0 33 ............................ TACATTACCAAATGTCAGCTTTTTAGGTTCTGA 1300919 28 100.0 33 ............................ TTCATCACGACAGGCGGTAACACTTACACAAGA 1300858 28 100.0 33 ............................ TAACAGTTGTTTGGTCATTGGTTTCTTGAACAA 1300797 28 100.0 33 ............................ TGACCCCATCGGTTATGAAACCGACCCCGATGC 1300736 28 100.0 33 ............................ TGAAACAATGTACACGTTGGGTGGTATTAGCTG 1300675 28 100.0 33 ............................ CGTGATGCTACTTCATTTGAGGAATTATTTGAA 1300614 28 100.0 33 ............................ TATACTTACTATCGCCGTCAGCGAAACTGACGT 1300553 28 100.0 33 ............................ TGTGCGAGCTTGAATCACACTAAAAGCAAGATA 1300492 28 100.0 33 ............................ TTAAATTACAAATTCATCCGATTTGATTTCCTT 1300431 28 100.0 33 ............................ CGAAGCATTCGTGCCGTCAGACTTAGTGACTAG 1300370 28 100.0 33 ............................ TCAGGATAGTCTGCTATGGTTGTGACTTTTCCA 1300309 28 100.0 33 ............................ CGAACTTAAAAAGCATGCATACGCATCTATCAA 1300248 28 96.4 45 ........................T... CAGGTCTTACTGATAAACATGGCGTTGAGATATTTGAGGGGGATG 1300175 28 100.0 33 ............................ TTATCTGTGGACTAAGACTGTTTGGTCTTATAC 1300114 28 100.0 33 ............................ TGGTTGATTTGGATGATTGGAAAGTTGTTATAC 1300053 28 100.0 33 ............................ TAGCAACCTAAAAATCAAAATGAAATTAACCGT 1299992 28 71.4 0 .....G...A..T..A.....AAT...G | ========== ====== ====== ====== ============================ ============================================= ================== 62 28 99.4 33 CTTTTACCCGCACCTGCGGGGGTGATCC # Left flank : CTGAAAACAGATAAAATAATTGAAATTGGTGCTGTGAAAGTTAATGGGGAGAAGGTATCAGAGTTTCAGACATTTATAAAAATTGATAAAACTTTGCCTGAGTCTATTATAAATCTGACAGGTATAACTGATAAACTTCTATTAGAAAATGGTCAAGATTTAAAGATTGCTATTGAAGAGTTTAAGGACTTTATAAATGATAGCCCTTTGGTGGGCTATAACGTTGATTTTGATAGAAATTTTATTCAGAGTATTACTAAGGAAGTAGGTATCTCTCCGTTTGAAAATAAATTTATAGATTTGATGAGATCTGTTAAAAAAGAAAAAATGTTTTTAGTAAACTATAAGTTACAAACTGTTTTAAAAGCTTATGATATATTAGATACGGTACCTCATAGAGCTTTGGAAGATTCAAAATTAACGGCTGAATTAGCTACAAAAGTGAATGGATTTTTAGAAAGTATATCAAACTAATGCTGAAATACTTGGGATTTTTAAGT # Right flank : TATAAAGCATTGATTTTCAATCCTTAACCCTCCTGCGTACACTATATAACTGCCTTATTAGGAACGCATGTATTTTAAAATGTAAAGTATTTTATTAACAAAGTTATGTTGAGTATAAAATACTAGATAATAAAAAGACTGATATCCCCACCAGGCCTATCAGTCCTTTTTTATTCCCCAAAATTCTGTTAAACTATAGAAAGTGATGAAAAAATAACGGAGAAAAAATAATTAATGAGTATTTTAACAGTACAAAAACTAAGTCATGGCTTTGGCGATCGTGCGATTTTTGATGATGTGAACTTTCGCTTGCTTAAAGGGGAACATATCGGCTTTGTGGGAGCAAATGGCGAAGGGAAATCGACCTTCATGAATATTATCACGGGTGCTTTACAGCCTGATGAAGGTAAAATCACTTGGTCGACCAAGCATCGTGTGGGGTATATGGATCAGCATGCTGCACTAGGTAAGGGCAAGACAACCCGCCAATCGCTTTCTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTACCCGCACCTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //