Array 1 5142-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTKH01000453.1 Xanthomonas oryzae pv. oryzae strain LYG49 scaffold452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5141 31 100.0 34 ............................... GCGTTGGCCGTAGTCCTCCCGTCAATTGTGGTAA 5076 31 100.0 36 ............................... TCGTCTCCGTCTAAGTCAATCCAACTTGTTGGTGCT 5009 31 100.0 35 ............................... TTGATGAAGCCGGCCGGGTGGCCGTCCAGGTGGCC 4943 31 100.0 36 ............................... TGTAATCCTCATTAGTTGGTTGGGTGTGTTGCTGGG 4876 31 100.0 34 ............................... GCCTTAAAGGGGGAGATACATATGTCAATGCTGC 4811 31 100.0 36 ............................... CCGCCAGAGCGCCTTGCCTGCGAACTTTCCGTGGTC 4744 31 100.0 34 ............................... TTGCGATCAACACAGATCTGTGCTCTCCATTTCT 4679 31 100.0 34 ............................... GGCGCCAGCAGCATCAGAATTTATTTGAGGTTGT 4614 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 4547 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 4482 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 4416 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 4352 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 4288 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 4223 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 4159 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 4094 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 4030 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 3966 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 3901 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 3837 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 3770 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 3706 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 3639 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 3574 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 3508 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 3443 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 3379 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 3313 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 3248 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 3183 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 3116 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 3048 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 2983 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 2918 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 2852 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 2787 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 2720 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 2653 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 2588 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 2523 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 2458 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 2393 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 2327 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 2262 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 2198 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 2133 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 2068 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 2002 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 1936 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 1869 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 1804 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 1738 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 1672 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 1606 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 1541 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 1476 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1409 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1343 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1278 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1211 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1145 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1079 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1012 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 946 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 881 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 817 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 752 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 687 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 621 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 555 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 490 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 425 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 359 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 293 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 228 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 163 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 96 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 31 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 79 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : C # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8076-10994 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTKH01000571.1 Xanthomonas oryzae pv. oryzae strain LYG49 scaffold570, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8076 31 100.0 34 ............................... TCGCCCTGTGCCTGTGATTAACTGCCCCGTCTAG 8141 31 100.0 33 ............................... GACATACGCAAGATCCGTGCGCGCATGTCGATG 8205 31 100.0 36 ............................... AAACCTATGGCTTGAGCAGGGAGGAAGTTCTCCGTT 8272 31 100.0 35 ............................... CACAGGGGCTGCAACTCAGTCCTGGGGCTTGTTGA 8338 31 100.0 35 ............................... GTACTAGGTAGAGCCTATCCTTGGGCCGTGGGTGG 8404 31 100.0 34 ............................... TTAGTAGTTGTGCTACTAAAGGTCAGCTGCACCC 8469 31 100.0 36 ............................... ATACAATACTCCCGTGTGTTGGTGTGTTGGCAAATA 8536 31 100.0 35 ............................... CAGTGCAGCCAGCATCCTTGCATTGACTCTCCAAG 8602 31 100.0 35 ............................... AACCTAAGCAGATGGGAGGGCTACCTTGCAAGACG 8668 31 100.0 35 ............................... CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 8734 31 100.0 36 ............................... GTCCAATCACTTGTCGAGAGTGGCAAGCAGACTGAG 8801 31 100.0 35 ............................... GCCCTGGAGGCACAGCTGGATGGGCATACAGCCGG 8867 31 100.0 34 ............................... ACGATGGTACAACCACGAACTGGACAGACAATTA 8932 31 100.0 35 ............................... TGGTGCTACCGGCACGGCCTGCATGCGCCACGGAT 8998 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGAGGCGTTGGTG 9063 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 9128 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 9194 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 9260 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 9326 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 9392 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 9459 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 9525 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 9591 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 9656 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 9721 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 9787 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 9853 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 9918 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 9983 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 10047 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 10112 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 10177 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 10241 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 10307 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 10372 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 10439 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 10504 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 10572 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 10638 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 10702 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 10766 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 10833 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 10898 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 10964 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 45 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ACCGCATCCCGGAAGACCCACAATGTTGTCCGCCGTCGCGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //