Array 1 2766482-2766152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076405.1 Providencia rettgeri strain PreM15628 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2766481 28 100.0 32 ............................ AATTTTTATTGATAAATTGAAATCGGTATCAA 2766421 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2766361 28 100.0 32 ............................ GATAATTGTATTGACCTAATTGCAACTGACCC 2766301 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2766241 28 100.0 32 ............................ TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 2766181 28 78.6 0 ......T...GT......A..AG..... | AT [2766160] ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ATATTAAATCGATTCAGGCAATACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGCTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTACCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAATTGATTGTTATCACTTATTTTTATTTTAAAGTGCATC # Right flank : CTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGATTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2775553-2775165 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076405.1 Providencia rettgeri strain PreM15628 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2775552 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2775492 28 100.0 32 ............................ GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGT 2775432 28 100.0 32 ............................ AACTTCAAATCATGCCAGCCGTTTGTATTCCA 2775372 28 100.0 32 ............................ TCGAAAGGGTTTAGTATCACACTGGGCAAGCC 2775312 28 100.0 32 ............................ TAGTTCTGCACGAAGTTGTTCAGTACGTTCGG 2775252 28 100.0 32 ............................ AACCTGAACTCTAATATATGCAGAATATTGCC 2775192 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCAATTTTGAGTCTTTCGATAAAACGAAGCGCGAGGTAGCGATGTTAGTTTACACGCTCTAATGACTGATAAACCCGCGGCCTTTAATGACTGAGCACAGGATTTCTTTTCAGCCACTACCAACCCTTTTTTGCGAAAAGCTCCTTCATCGCGTGGTTTTCAAGGCTAACTTCCGCAAAGAGCTTTTTTAGTTTCGCGTTTTCATCTTCAAGCTCTTTTAATCGTTTAACATCATTAGCTTCCATGCCACCATACTTTGATTTCCAGTTATAGTAAGTCGCGTTGCTGATCCCATTTTGGCGGCAAATATCTTCCACTTTCATGCCAGAATCAGCGAGTTTTAAAATATTAACGATTTGAGTTTCAGTAAAACGGGCTTTTTTCATTATGACCTCTGCAAATTTTAGGGCAGAAAATCTAATTATAGCTGTCTTATTTTAGGGGAAGTGGACATAGGCAGCTTAGAAAATATAGACATTACAGATTTCAAGACAGTTGTT # Right flank : GCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2777887-2776838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076405.1 Providencia rettgeri strain PreM15628 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2777886 28 100.0 32 ............................ TGAAACAGATTCGGTAAGAATTTATTTACAAG 2777826 28 100.0 32 ............................ GTATTTTCCCACGTTACATTGTACTCCCCCGC 2777766 28 100.0 32 ............................ GTCCTTGGGAGGGCGTCACGTTCCATGCCCAG 2777706 28 100.0 32 ............................ GCATGGAAAGACCAGGAGGTTGAGGTGATAAT 2777646 28 100.0 32 ............................ GTTAAACCTAAACTCGCCAGTCCCCGTATTTT 2777586 28 100.0 32 ............................ ACCACCGTATTGGCTTGGGGCTCCTATTGAGC 2777526 28 100.0 32 ............................ GTAAGGACAGGTAAGAGGGTACGTTCTGTCAT 2777466 28 100.0 33 ............................ AATCACAAAGCTCATCATGGTGGGCTTTTTAAT 2777405 28 100.0 32 ............................ AACAAAAATAGTTCTGGTTGCCGGAGGTAACA 2777345 28 100.0 32 ............................ GTATCTCTGGAGCAGCCATTGATGCTAAACAA 2777285 28 100.0 32 ............................ TACACCTCAATATCTATCTTTGACCGTATCTC 2777225 28 100.0 32 ............................ ATATGGGGAAGAAACTACCAAGGAGACGATTC 2777165 28 100.0 32 ............................ TTGTAGATATTCGGCATATATTCATTACTTAG 2777105 28 100.0 32 ............................ ACTGAAATTATCAACTGTAATGTTATATGGAT 2777045 28 100.0 32 ............................ TGTAATTTTCGTTGCTGTTGAATAATACACGT 2776985 28 100.0 32 ............................ GTTCCAATTATCAACAAAACCACCTGCTTGAT 2776925 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2776865 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCGATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACAAATTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTCAAAGACTTAAATAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTAATCTATTTTTGTTATA # Right flank : GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGTGTTCACTGCCGTATAGGTGTCCACTCCCCATTAATTGAGACACATTAAATTAGAGTTTTCTAACTGTTTACGATAGGCCTCCGGTGGGAGGTGATTTAAACTTTCGTGAGTTCGATTTTGGTTATAATCTTGTAGCCAAAACCATGCTAATTCTCGAACTTGGCTTAACGATTCAAATAAATACGCATTTAAAAATTCACGACGGAACGAACCATTAAAACGTTCGATAAATCCGTTTTGTTGTGGTTTTCCTGGTTGAATATGGCACAGCAAAATTTGGTTATCTTCACAATAATTCAATAAGTTAACTGAAATGAGTTCAGGTCCATTATCGACTCGGATCTGTTTTGGCAATCCTCTTTCGGCTTTTAAACGTTCAAGCACCCTGATAACACGTTCAGCCGGTAATGACGTATCAACCTCAATCGCCAAGCATTCTCGCGTTCCTTCATCAATAATATTGAGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //