Array 1 113645-111481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYX010000005.1 Corynebacterium diphtheriae isolate YEM0058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113644 29 96.6 32 ............................G CCTCTGATGGAGGCCTGGAATGGATCATGGAT 113583 29 100.0 32 ............................. GCTCATCGGTGAGCAGCGCGGAGTAGAAGTTA 113522 29 96.6 32 ............................G CTGATCGTCGAACTCAAGGGCGCGTTCGCCCG 113461 29 100.0 32 ............................. AGCCGCGGCGTTACGCCCCTCGATCAAAAGAT 113400 29 100.0 32 ............................. AATTCCATCGAATTTATGTCAATTGTGTGTTG 113339 29 96.6 32 ............................G TTTGCCGCCGAATGAATCCGCGCTTGCGATTG 113278 29 100.0 32 ............................. GATCCCTGAGCGATTTGCGATCGCATTAACCG 113217 29 100.0 32 ............................. CGTCTCGACGAACAACGCGCAAACCATAGCCG 113156 29 100.0 32 ............................. GAGTACCCGCGGAGTGCATTGACGCGGGCAAT 113095 29 100.0 32 ............................. ATCATTCCCACAGCTAAACGGCTTGCCAAAAT 113034 29 100.0 32 ............................. ACCCCGCGATCTTTCTTTTCAGTCAGATTCCA 112973 29 100.0 32 ............................. ACCCATCATGACTAGGCCTTTGCAGGAAGAGT 112912 29 93.1 32 ...............A............G TTTCTTCGAAGCTGCGGGGGCCTCGGTTTGGG 112851 29 100.0 32 ............................. TTTCCCATGCGTGGGATCGACGGGCCGCACTG 112790 29 100.0 32 ............................. ACCCATCATGACTAGGCCTTTGCAGGAAGAGT 112729 29 93.1 32 ...............A............T CGCCCGTGGGGTCTGGCTATAAAGGCCACAAA 112668 29 93.1 32 .................A..........G ACCAATCGCGGCAGTAATAGGCGATGTGAAGC 112607 29 96.6 32 ............................G TTCGATCGAAAGCACATTGACTTTGCCGACGA 112546 29 96.6 32 ............................G TTGCTAGGCTACCGTTTCTACACGTGGTATGA 112485 29 100.0 32 ............................. GCCAAGCACAAGACCGAGGGGGTTTAGCATAA 112424 29 100.0 32 ............................. GTCACCCCTGAAACTGTAATAGCGTGGCTGAA 112363 29 96.6 32 ............................G CGATGATGTTTGAGCTGCGTTCACAAATGGAG 112302 29 100.0 32 ............................. TCAACAGTGAAACGCGCCGGACAGGTACATAC 112241 29 100.0 32 ............................. CCACGTATCGCAGTGGCTATCTCACACCGTGC 112180 29 100.0 32 ............................. CAGAACATTTGCGACGATCTGAGCTTTTGCGA 112119 29 100.0 32 ............................. GGGCGTTCGAGGATTTTGGATATGATATGGGA 112058 29 93.1 32 .............T..............G ATAAGGACAAGGTCAATAATACCATGGCCTCG 111997 29 96.6 32 .............T............... GCCACGACAATTACAGAAGGGGCGTGGACAGA 111936 29 96.6 32 .............T............... CACTGATACCACCCTCGCAAAGAAACACCCCG 111875 29 96.6 32 .............T............... TGTATCCTTAGGGGACACTGACCTTGCTCGCA 111814 29 96.6 32 .............T............... AAAAGGGCTGCGAGTAGGGTTAGCGCGTCATT 111753 29 96.6 32 .............T............... TCAAGTAGATAATCACACCAGCTGGTGTCGGC 111692 29 93.1 32 .............T..............T CTGGCGCTCGTCTGCCAGGTCTGCAATCATGA 111631 29 93.1 32 .............T..............G CGCGGATTCATTCGGCGGCAAACTTTCCGTGG 111570 29 96.6 32 .............T............... TCTTGCGGAAGCGTATCCACGCTAGACCGTCT 111509 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 97.6 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATACAGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGCGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : GTTTTCCCCGCACTAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //