Array 1 16595-19675 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTO01000008.1 Salmonella enterica subsp. enterica serovar Muenster strain 26 NODE_8_length_207444_cov_23.0938, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16595 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16656 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16717 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16778 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16839 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16900 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16961 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 17022 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17083 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17144 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17205 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17266 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17328 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17389 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17450 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17511 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17572 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17633 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 17694 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 17755 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 17816 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 17877 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 17938 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 18000 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 18061 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 18122 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 18183 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 18244 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 18305 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 18366 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 18427 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 18488 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 18549 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 18610 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 18671 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 18732 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 18793 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 18855 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 18916 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 18977 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 19038 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 19099 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 19160 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 19221 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 19282 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 19343 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 19404 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 19465 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 19526 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 19587 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 19648 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 194528-196202 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTO01000009.1 Salmonella enterica subsp. enterica serovar Muenster strain 26 NODE_9_length_196422_cov_24.4486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194528 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 194589 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 194650 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 194711 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 194772 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 194833 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 194894 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 194955 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 195016 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 195077 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 195138 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 195199 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 195260 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 195321 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 195382 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 195443 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 195504 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 195565 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 195626 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 195687 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 195748 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 195809 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 195870 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 195931 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 195992 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 196053 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 196114 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 196175 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //