Array 1 166660-164817 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUIZ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033889 CFSAN033889_contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166659 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 166598 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166537 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166476 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166415 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 166354 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 166293 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166231 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166170 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166109 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166048 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165987 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165926 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165865 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165804 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165743 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165682 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165621 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165560 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165498 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165395 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165334 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165273 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165212 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165151 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165090 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165029 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164968 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164907 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164846 29 96.6 0 A............................ | A [164819] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183734-182791 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUIZ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033889 CFSAN033889_contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183733 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183672 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183611 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183550 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183489 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183428 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183367 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183306 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183245 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183184 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183123 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183062 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183001 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182940 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182879 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182818 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //