Array 1 253236-251251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVD010000005.1 Listeria booriae strain FSL L7-0990 NODE_5_length_386126_cov_17.274434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 253235 30 100.0 36 .............................. ATAGTAGAAGGAGATATTGTCGTGGACCGGATGGTC 253169 30 100.0 36 .............................. AAGCAATTACCTGAAACATTTTTAGGGTATTCTTTC 253103 30 100.0 34 .............................. TTGTTTGATGATCGAAAACTGATTACTAAATTGA 253039 30 100.0 36 .............................. CCAATATTTTTTCTTACTTGGCCAATGTGGAAATTG 252973 30 100.0 36 .............................. CTTCCTCAATTAAATAATCACGTTTTCGCGCAAAGC 252907 30 100.0 36 .............................. CAATGATGGCACGAGGTTTAATTTCTTTGACGTCCC 252841 30 100.0 34 .............................. TCTCTGGATGCATTACTGAACCAAAAAGACTTTT 252777 30 100.0 34 .............................. TTTAAATTACCCTCTTCCTTTATAAACTTATTAT 252713 30 100.0 35 .............................. TTGGGATGAACATTTTTATAGATTATTCGTGTGCT 252648 30 100.0 36 .............................. TCGGATAACCACCCAAGCCAATCCGCGTATTTCTTT 252582 30 100.0 35 .............................. TTCGTATGCTAGGAGACTACCGAGGATTAACCGTA 252517 30 100.0 35 .............................. CCGATAATCATGTTAATAAATTTCGCCTTCGTTTC 252452 30 100.0 36 .............................. TTTTAATCCAGCCGCTTTTTTCCGAGCTTGGGCAAA 252386 30 100.0 34 .............................. CCACCAAACACATCCGGATGCTTCGCAAGTTGTA 252322 30 100.0 34 .............................. TTTGTAAAGCCTGTATTTGAAGCAAATAAAAAAC 252258 30 100.0 36 .............................. ATTTTAGACGATAAGCGTTGCACTCAAAATAGAAAA 252192 30 100.0 34 .............................. TTTATAGTGCATCGTCAGTAGTATTGTAGGCTTT 252128 30 100.0 35 .............................. ACGATTGCCCAGCGTCGGAGCTTATTCCAGCCAAA 252063 30 100.0 36 .............................. ATATTCAACGAGACACGTTATTCAGGAAGGTTAGGG 251997 30 100.0 34 .............................. CCCCATTTCAAATTGGTATAGGTGAACCTTTTGA 251933 30 100.0 34 .............................. AGCAGTAGATAACTTCTATCAAGCCTCCTCCCTA 251869 30 100.0 36 .............................. TCTATAGTATAAACTAGTAAGATAGTAAATATAATA 251803 30 100.0 35 .............................. GTCGAACTATATCCTAGTCCGCCTAAATTCCAACG 251738 30 100.0 35 .............................. TGGGAGTTATACTAAGTTTTTCTGTACCAGTTAGA 251673 30 100.0 36 .............................. TTGTATGGGAGACTGGGAACAACTGGAGCAGCGCGG 251607 30 100.0 35 .............................. TTTTTAACATAGGCGTTCTTACTCAACGACCGTGA 251542 30 100.0 36 .............................. CTTCTCGATTTCATCCGGCCACGTTTTCGAAGCAAC 251476 30 100.0 36 .............................. CTTCGCCCTGTCACTGTTGTTTCTGTTTCGCGTTTG 251410 30 100.0 35 .............................. AGTTGTTTTAAAGCATCTTCAAAACCATTCTTATT 251345 30 100.0 35 .............................. ACTGCAGATATCTTAGTGCAAATTGGCTGTTTCTT 251280 30 93.3 0 ...............G.A............ | ========== ====== ====== ====== ============================== ==================================== ================== 31 30 99.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGTAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TCGCCTTTCCTCCTCATTTTTTACAAATCTGAATCAACTGTTTTTATCTAAAAATAAAAGATACTAATATAGTTCATATCGTGGTATACTAACCGCGAAGGGAATAAGGAGGCATTTTGTATTCTCCCTGACTATACTAAGGAATCGGAAGGAGATAATTACTTTGAATCACAAAACAGTAAAACTTATCACTCCTGTCATGGGACTCTCCCTGCTACTCTCAACTCTAGCTCCTGTTATTCCAGTGTCTGCGAACGAAACAAATGAAAGCGCTGTAGAAGAAGCCGCAAGCCAATACGCGTTAACAGATGTAGATATAGGTATAGCCAATCAGTATATTACGCTCAATGCAACAAGTAATAATTTTAGCGTCTCCCCCTCTATTTCAAATGTCCTTTCTAGTGAAAAAGTGAACATTATTAATGCATTCGTTGCTACTGCTAATACTTTTATAAAAACTGCCAAAATGGATATATCGATGCCCATTTACGCTATTGATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 517946-516922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVD010000001.1 Listeria booriae strain FSL L7-0990 NODE_1_length_653137_cov_15.554825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 517945 30 100.0 36 .............................. GAAGTTGAACAGCTGCTTATTAATTCTCATGCAGAA 517879 30 100.0 36 .............................. AACTGAGATAGATAAAGAGATTGTCGAAACAAAAGA 517813 30 100.0 37 .............................. TGGGCTCTCCTAACTACATCACCATACTTGAATTCGT 517746 30 100.0 36 .............................. TATAAATCAATTGCCCTATCGAGGGCTTCATTTAGC 517680 30 100.0 36 .............................. ACATTTTGACGATAAAGGAGAGCTTTGGTCAGCTAC 517614 30 100.0 36 .............................. GTGTTCTTTACCGATTCCGCTAAACTCTTATTAGTG 517548 30 100.0 36 .............................. TTACGATTCGGAATTCAAGTTGATGGCGGAAGAACT 517482 30 100.0 37 .............................. AACAATCGAAAAACAGAAAGATAGATGGATTTGCAGC 517415 30 100.0 37 .............................. ACTCGTTATGGCGCTAATAAGCGGATTAATTCAAATA 517348 30 100.0 36 .............................. TCAAGTTTGCCGCAGTTACATCTATGTCGTCACTGT 517282 30 100.0 36 .............................. GCTGGAAGAATTGTACTTATTAAAATGAGAGCCTTC 517216 30 100.0 36 .............................. AACGTAAGTATGATACTAAGCCGCGGCGTTCGTGCC 517150 30 100.0 36 .............................. TACTTCAACAAAATCCTTTAGTCGAATGTTTTCCAT 517084 30 100.0 37 .............................. ATCCTTTCCAAGATCGCCAATCTTCGCTTTCGTGTTG 517017 30 96.7 36 .................A............ TGGCATCAATTTCCGCTTGAATCACGTCGTACAATT 516951 30 96.7 0 .............C................ | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAGAGAGGGGATGGCTGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTCAATCGGGTACCT # Right flank : ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAAGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 166546-167499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVD010000008.1 Listeria booriae strain FSL L7-0990 NODE_8_length_214880_cov_21.912012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 166546 30 100.0 36 .............................. CTATATGCACCGATTATCTTTCCAACTTCTAATATG 166612 30 100.0 37 .............................. GTAGACATTGAACGCATTGCAGAGGGTAGGGGTAATA 166679 30 100.0 36 .............................. TATGGTATCTTTTTGGTTTCTCTACCTTTTTCTTTA 166745 30 100.0 35 .............................. TCCCATTCCAACGAGTTCAAATACTCCCGAACTGG 166810 30 100.0 39 .............................. CCGAGAATCAAGAGCTATTAGAAGAGGAAGAGGCTTTAT 166879 30 100.0 36 .............................. CGCAGCAGTATCGAAGTTGTTCGTTTAGGTGATTTT 166945 30 100.0 36 .............................. TTTGAAAACACTTCTCAAAATACGATGTCGCTTCTC 167011 30 100.0 34 .............................. GCCGTCGACTCGTCGGATCTCGCCCGCCTCCTCG 167075 30 100.0 36 .............................. CCGCGTCGATATGATGCACATCTGATCCAGGTTTAC 167141 30 93.3 36 ....................TG........ GTAGATATAAGCAAGCTCAAAACGAATGATATTGTG 167207 30 96.7 34 ....................T......... ACCTCCATTTATATCACCCCTCAAAGTGATTATA 167271 30 96.7 35 ....................T......... CAACTGCGAGCGTACAAAAGTAGTTATCAGTTACA 167336 30 96.7 37 ....................T......... AAGGCAATAATATTCTGCAAACCATCCGGCAGATTGC 167403 30 96.7 37 ....................T......... TTTGAAATAAGACGCAGTATTTCTGATTTAACGCATT 167470 30 83.3 0 .................A......A.G.TC | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 97.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATATGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTATTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : CCCGAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTTATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACCCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACGCCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTATAGAGCAATACTTTGATTCCGTTATCGAGATTCTTTAAGAAATACAATGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //