Array 1 40459-40822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAU010000026.1 [Clostridium] hylemonae strain BSD2780061688b_171218_A6 NODE_26_length_45055_cov_50.9977, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 40459 32 100.0 33 ................................ ATAAAAAGTATAGAACGCGCTGCAATGGAAATA 40524 32 100.0 35 ................................ ATAAGCTTAAAAGAGCGATGGAGACACGAGGAAAA 40591 32 100.0 34 ................................ ATTAAGTTGCGAGGATGCGCACCCGTCCGATTTT 40657 32 96.9 34 .............A.................. GGATATTTGGATTGCATCCTCTGAAATCTATTCG 40723 32 93.8 36 .................G...A.......... TCACAAATGGCTTGATTCGTACTGACAGAGTTTGCC 40791 32 87.5 0 ................A....A.....T...A | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 35 GTCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Left flank : CAGCCAAGAATGCATAGTCAATAGAATAAAAATCATATTGAAAGCCGTCAGTTCTTTTTATTAAGGAGCTGGCGGCTTTTTTGTGGCAAAAATAATTAACTGTTCATTCTGTAATAATGATATAATTGAGTAAATATCATTCAGAATTATGAAGGGGAGGGCTGTCTGCTTCAATGTATCTGATGAAGACCTGCAGTGCTTCATAGGTATAATGAGCGTGACCGGGATTGAAGGTGCTATGCTGTCTGGGTAATAAGTATTAAGACAGAGGCATAACGTGTATGGGCTGATAGATGAGAGAAGTGCTGTATATGAGATTCCGAGTCTGTAGTGCGAATGTGAAGTGAACATAAAATTCCCAGGAGATTCGCACCAAAAAAGTTGCACAAAACAAACAGGCGTATTAGACTATAAGATAAATATGATTATATATCTAAAGAAATTCGTAGTGTAGTACAAAAAGCTTTGTCTTTTTGTGTTGGGATTTGGATATATTTGCT # Right flank : ACTTTTAGCAGTCAACCACGCGTTAATGAATGACTGTTGTTCTCCTTGTGGGTGTCTGCGTCTCATTGTAGATGAAGATCCACGGCCCCCGGTGACAGTGACCGGCAAGGCGGAGGAGCAGGTGATCCGTTATGAGGAACTACAGAAAATGGAGGGATAACAGGACATATGATAAGTGTATGTGCTCTCCATCCGTAAGGGTGGAGAGCTTTTTTCTGCCAGCATTTTGGGAGGCTGTTTTATAAAAAATAAAGAAATTATTAGGATTTCCTAAAGAAGCGGGAATAAAGAGTGCAATTTTTCAGAAGTCTGCTATAATGTTCAGTAGGCTGTGATAAAGGAGAAATGGAATGGGAACCAGATGCAGAATAAAAAAGCCAATACTGCCTAAATATGCCATATTTCCGCTGCTTGCCTGTGTGACGGTAAACTTTATGGCATACAACGGGACAGAAGTGCTGACCAGGTCGTGGAAACATTATGACCTGACACTTCCTTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 1 176687-175919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAU010000004.1 [Clostridium] hylemonae strain BSD2780061688b_171218_A6 NODE_4_length_198120_cov_41.873, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================== ================== 176686 33 100.0 34 ................................. GTACCAATGTTGATTATCTATCAATATGCGATTA 176619 33 100.0 35 ................................. CTCCGTGCCCCATGCATTCCCCATTTCCTATATAC 176551 33 100.0 33 ................................. CTTATGAGAAGCTAGAAAATAAGGAATGGTTTG 176485 33 100.0 34 ................................. CTATATACATTTCGACGTGATCGAAACTAGGATT 176418 33 100.0 33 ................................. GCATCTGGATGTGAGATTCTATCAAAGATGGAC 176352 33 100.0 35 ................................. CTTTCGACTGCCGGAACCATATCAGCATAAGTTCC 176284 33 100.0 35 ................................. ATTTTCATGAAGATGATATTAATATAGAAATGGGT 176216 33 100.0 34 ................................. ACGATTGAGGCTTGTCAGAAAAATTACGATAATT 176149 33 100.0 34 ................................. AGCCTACAGGACATTATGAGTGAGCGATCACTGC 176082 33 93.9 98 .................A....C.......... TGGAACACCTGCAGTCTTGCTCCAAGACCGATGAGTTTCCCTCCACATGGAAGGAATTGAAACCATCTGCCGACAGCCTTTGTCTCTGAGCTCCAGCA 175951 33 75.8 0 .C..T........C...A.A.C.....C....C | ========== ====== ====== ====== ================================= ================================================================================================== ================== 11 33 97.2 41 GTCTCCTTCCGCATGGAGGGAGTGGATTGAAAT # Left flank : AGAGAAGACGGTCCACGAGATCGGGCGGAAACATAATGTGACCGTGGCCACGTCAGATGCGCTGGAGCAGGTGATTATCCTTGGGCAGGGCGGAAGAAGGCTGTCTGCGGAAGGACTTCGGGAAGAGGTAGAACTGGCGATGCAGGAGATGAGAAGCGAGCATCTTAAGGAGAGCAGAAGTACCCGAAGCTACCTTTTTGATAATCTGCCGGATGAACTGGCGGACTATGTGGAAGAGCTGCGGATGGGGGAAGACTCTTCTGATTAACGGGTATGGGTCTGCTGAACAGGAGGAAAGGTTAAGTGTTGTGTAAGCCTCTTTTACTTTAGTGCGAATGTGAAGTGAACATATAATTGCCGGGGGATTCGCACCAGAGAACAGGCTGTTTTGTCAGCAGCGAGGCCTGAAAGATGTGAATTGTGCTGTTATTAATTTGTGAAATTGTGCAGTCTGTATAGATGTAATTGGGGTTTTAAGTTATAATATGTATAGAATTGCT # Right flank : AGCTGTCAGGCGGCAGATGTTTATTTTAATGATCAGGTGGTTAAGAATAGAAGGCTGCCGGGGAATAAGTCTGAAAACAAAAGTCCTATTCCTGCGGCAGCCTTTACATATTATCTTATTTTGCAGCCTTGTCGGCAAAGTCGGTCGTTACGAGGTCGTCATATGGCGCCCGCTTATCAAGCTCATTGGCGTCTTCCAGTATATCCTGAAGAAGCTCAAAGCTTTTCTTTTCAAATACGAGATTGTCTTTCCATGTGTCCTGGTCATAGTATCTTGTCACGATAGTAGTGATAGTGTCCAGGTCTGTCTCTTTAAACTGAGGGGCGATGATGGAAGCAATTTCCTCAGGGGTGTGGGACTGTACATAGTCCATACCTTTCTGCAGTGCATTCGTGAAGCCCTGGATGATTTCCGGATTTTTGTCGATGTAGCTCTTCTTTGCGGAGAAAGCGGTGTACGGAACATAGCCGCTGTCGGTTCCGAGGGAAGCTACGACATAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTCCGCATGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 19892-20390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAU010000008.1 [Clostridium] hylemonae strain BSD2780061688b_171218_A6 NODE_8_length_161606_cov_42.4998, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 19892 33 100.0 33 ................................. GAGTCCCTGAACGAGTTGGTTCGACTCCGGCTC 19958 33 100.0 33 ................................. AGTCAGGCAGAAAGCATTAAGGAAGCAGAGAAG 20024 33 100.0 34 ................................. GTCTAAGTTTGCCCGTACCTTTCGGTTGATCTCT 20091 33 100.0 33 ................................. GTGTCACGCTGTAGCCGTTCTCATCGGCATATG 20157 33 100.0 34 ................................. ATCGTTATAGGCCTTGAAATATTCGCCGCCGGCC 20224 33 100.0 35 ................................. ATTTCTGTAAAAACCCTATAAAACAGGAATGTTCT 20292 33 97.0 33 ...............G................. TCTCCGCATATTTCGATGGTAGCAGCACCATCG 20358 33 93.9 0 ...............G...............T. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 98.9 34 GTCTCTACCCATTTGAGTAGAGTGGATTGAAGC # Left flank : GAAAGCGGCGATTAAGAAAAGTTGCAAAGCAATGTGTAAATTATGGACAGCGGGTGCAGAATTCCGTATTCGAGTGTAATCTTGATGCGGCGAAATATCGGCAGGTAAAGGCAATTCTTGAGGATATTGTCGATAAAAGTAAAGACAGCCTCCGATTTTATAATCTGGGAGATAAATATAAAAACAAGGTTGAACATATCGGGGCAAAGAAAAGCTTCGATGTGACAGATACTTTGATTTTTTAACTTATCAGGGAGTAAAACTTTTTGACCGCGTATAGGCATAAGTTGTGTGGCTGGCGGCGCAAAATCTGATGAGAGAGTAATTACGGTGCGAAACATATGTGAACATAAAAATGCCGGGAGATTCGCACCGAAATGTATTAGATATTTTGTTTAAAAAAATGAAAATGTAATAGAAAATATTATTTTACTACCAAATAGTATGCAATTGTGACAAGTATTCGGATAGTATGTTGAGGAATAATGTGCATAATTGCG # Right flank : CGCTCTAGCTAGAGCTAGTTGAGGCTTGCCCATTGTCTCTTCCCATTTTTGTATGTGGTATTTTACGAGCCGAAAGGTTCTATCTGACCTGGGGATATACCGATATGGGCAGGGTGATCAATGGGTTAGCTGCTATCGTTCAGTACAACTTCAAACTGGATTCTTTTTCAAATAACCTGTCTCTTTTCTTCGGACGTAAATATAATCGTATAAAAGCATTTGATTGGAAAGGGAATCGTTTTCCTCTGTAGTCGGGCTGCTGAAAGAAAAACCGCTGGAACAGAAATCCCCTCATGTTGATGAAACACCTGTCCAGGTGCTTTTTGAGGAGGGAAGAAGAAAAGCTCCGGTCTGATGAATTATCTTTGGGATGGTAACTGCTCCATTCCAAACAATCTTGCAGAAAACGGTGTCCGTCCATTTACCATAGGTCGTAAGAACTGGCAAATCAACCATTCAAAAAATGTGTCGCCCCCATATCTTTCAACAATAACAGAAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACCCATTTGAGTAGAGTGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //