Array 1 97882-97460 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIW01000003.1 Clostridium botulinum strain 1430-11 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 97881 30 100.0 34 .............................. GTGATTAAAAAAGAATCTCCGTACACAGTTTGGA 97817 30 100.0 35 .............................. CCGGCTTTCCCTATTTCTATTTTAATGTCTTCTAT 97752 30 100.0 35 .............................. AAATCAATACCACACTCATTGCAACTATAGTGCAT 97687 30 100.0 35 .............................. GAGCTATAAAAGTATGTTTTGTTTTATGTAAATCC 97622 30 100.0 37 .............................. TAGAATAGGCTTTAGGCATGGCGAAGAATTTGCAGAG 97555 30 100.0 36 .............................. AAACCATCACTTAAATCATGTCTTCGCTTTTCTATT 97489 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATGAAAATAACAAATAATTATATAGAATACGCTAATATTTTTTCAACCAACTTTAGCTTACAAACCTATCTTAGCTCTTGAAATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAGCCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATTACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTCCTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGAATTGTGATAATTTCTATGCAAATTATTAAATTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 99279-98793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIW01000003.1 Clostridium botulinum strain 1430-11 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 99278 30 100.0 35 .............................. GAGTTTTTTACATCTTTTCCAAATACAGCTACTTT 99213 30 100.0 35 .............................. AAAACTTTGTATAGATCTTTAGTTTTGTTTGTACT 99148 30 100.0 35 .............................. ATTAATTTTGTAAAAAAGTAGCTATGCCAACATAT 99083 30 100.0 37 .............................. GATGTTAGAAATTGATTTAGAAAAGGAAGAAAATCAG 99016 30 100.0 37 .............................. TTTACTTTTTTGTTTACATAAAGATATCTAAAAAAAG 98949 30 100.0 34 .............................. TCAACACTATTTTTTCTTTCTATAGCTATGTCAT 98885 30 100.0 33 .............................. TAGATTATGATCCAGCACCAATACTTTTATTAG 98822 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 35 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCATGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGCCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9133-10265 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIW01000014.1 Clostridium botulinum strain 1430-11 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 9133 24 100.0 42 ........................ GAAATCTTTTATTAACTATTGTTCCATCTATATATTTAAAAC 9199 24 100.0 43 ........................ GAAATGCAATACTTGAAGTATTAATATCCATCTTTAAGCTTTG 9266 24 87.5 42 ...........T..G.G....... GGAATAGAGATGGGAATCCTTGGACTGGATTATAGATAGTTA 9332 24 95.8 42 ...............C........ GAGATACACAACGATGTAATTCTCGACCTTCTTTTATTAATT 9398 24 100.0 43 ........................ AGGATTTCTTTAATATCTCCCCAAACTTCTTTTGCTTTTTCTC T [9411] 9466 24 79.2 42 ...A...........CG...G..G AAGATAGTTCATTCAACATTTGAGCTATATTATACATTGTTA 9532 24 91.7 42 .......C...A............ GAGATGGTAATGCTGCTATAGTTTCCTGCACCCTAAATCCTG 9598 24 100.0 40 ........................ AGGATATATTAAACATCAACCAATTTTGAGCTTGCACTGT 9662 24 91.7 42 ..................AA.... GAAATATTATTAAGCCTCTTACTACTTTTTTTATTTTAAATC TTCC [9671] 9732 24 100.0 42 ........................ AAAATTTTTCATCAAAACTCCATATATAATTTAGACTAGGAA 9798 24 100.0 41 ........................ AAAATAAATTTTCTATGTTCACTATTTTCCCAGCATGTTCA 9863 24 100.0 42 ........................ AAAATTTAGTTTTATTTCTCTTAACCCATGCCTTTACGGTGT 9929 24 87.5 42 A...............G......G GAAATACTGCAAATATAATTGCCTTTTTAATGTTATCCATTA 9995 24 95.8 26 ..............G......... AAGATGTACATGTTGTTATATCTCCT Deletion [10045] 10045 24 66.7 40 AAA......A..T..GTT...... AAGATGCATTAATCTGATTTGCCATTTGTTTATATTTAGA T [10049] 10110 24 95.8 42 .C...................... AGAATGCGTTTGCAGCTCTAAGTAAACATCTCTAAGTCTTAC 10176 24 91.7 42 A.............G......... GAGATTTAGTAGATTTAGCTGTATAAATTCTAAATTTTTCTA 10242 24 95.8 0 .............C.......... | ========== ====== ====== ====== ======================== =========================================== ================== 18 24 93.3 41 GTTTTATAGTTCCTATAAGGAAGT # Left flank : TAAAGAGTTTTTAACCAGTATAAAGAATAATATAATAGCAAAATACAATTCATTTTATAATGAAGAATATAAAGGAATTTTAAATATAAGTATATTAGATGAAAACAATATAAGAAAGAAAATAGATAAATATAAGAAGTGGATATATGAAGGATATTTAGGTGGTTTTATAATAGAGGGAGATACTGAGATAGTAGAACTTGCTTATAGCTGTGGATTAGGTAGCAAAAATTCTCAAGGCTTTGGATGTATTGAGACATTTAAAGATCTTAATGGTATTAAAAATTATAGCAGAATAGTTTAAATTTTAATATTTTGCAGTGAGCTAACTTTTTTATTATATGTATATAAAGTATTGATTTAACTGAATTTTTTAAAGATTAAGTGGGTTTTATAAAAACATTACTGAAGGTTTACTGCAAAATCTATAGATTTAGGTGATTCTTAACATTGTTAAAAACAAGATGTAGCCTTATTTTATGGTGATTTTGAAATTGGGG # Right flank : TTAAGTAATTTTAATAATATTTAATTATTTGTATTATTTTTTATTGGGGGGAGATTTTTAATCTAACATAGTTTAAAATTTACTATAACAAATAGATACTATTAAATCCTTTATAAGTAAGTTTAAAAAGAATTGTTATTTGGTATAATGTATATAAGATAATATTGTATTTAGTTGTTTTTGTGAATATAATTAGTATTAAACTAAAATATAAATTACGGGATAGGAGGATAAAAATGGGGAAAATAAAACAATCTAAATATAATATCAATGGTAAAACAATTATTATAAGACATGCAGAAGTCCAAGACGCTGAACAGTTGATTAATGTTATTAAAAAAGTAAATCAAGAAACAGATTTTTTGTTAAAGGATCCAGAGGAAGTTTGCTTAACTATTAAAGAAGAAAAAGAATTTATTCAAAGCCAAATAGATTCACAAGTAGATTTATTAATTGTACCAGAAGTTGATGGGAGAATAGTTGGAGTATGTAGCTTGAAT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAGTTCCTATAAGGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 13836-14057 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIW01000014.1 Clostridium botulinum strain 1430-11 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 13836 29 100.0 36 ............................. TACCAATAGAATCTTTAACTTTATTTTCCATATATG 13901 29 100.0 35 ............................. GTTTTTTTCAGTTCATCTGCATACTTCCTTACACA 13965 29 96.6 35 ....A........................ AATTGTTCTATTTTATAATTAAATTTATCTATTAA 14029 29 89.7 0 ....A.G.......A.............. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 96.6 36 TTGAGCATTAACATGAGATGTATTTAAAT # Left flank : ACCTAATGTTTCATAAAGAAATAGATTATGAAAATATTAAAGAGGAAGAATTAGATGAAATTTTAGAGGGGATAAAAAAAGAATTTCATGATCTAATAATATCAGTAAAGGAAGAAAATAAAAACATAATATTAGTTACTAATGAAGTAGGTTATAGCATTGTTCCGGCCTATAAATTAGGTAGGATATTTAGAGATTTTCAAGGTATTATAAACAAATTTATAGCTTCTTTGAGTGATGAGGTCTATTTAGTAACCTGTGGAATACCTTTAAAAATAAAATAAATTTTAATAACTAATTAATCTAATTATAAGTAAAAGAATTTTCCAACCGCATTTAATTTTAAAATCTATTCTAGGCATTGAAATATAAGACTTATGATAAGTTTTATCTCTACCTTTATAAAAAATGGCAAACGGTTGGAAAGGTTTCTTTGAAACCTTGTAAAATTAAAGGTTATATGCTATTCTTAGAATTAAGAAATGGCTATTTTGCTATGG # Right flank : TCAGCATGTAGAATAAGGTGATTCAAAATAAATTAAATCTATTTTGAATCACCTTATTTTTGTATAATAAATACTAGCTATTTTAGATAATATTTAAAATAGCATATAATTATTATTTTATATTGTCACAATAAACATTAATAGCTTCCCTTAAAAATTTAGAAAGACCAGTTTTATATTTATCTATATTAGCAGTAAATCTTTCATCATTAATATAAAGTTCTCCAAGCCCCCTAAATATTTCAGGAGTACAATCATAAAAGTTTTTTGAAATGTGCTCTCTAAATTGGTGAACAGATTCTTGGACTTCCTTATCATCTGGATTTTTGTCCATAAGATTTGCTAGTTTTTTATAAATTTCATCCCAACCTTTCATTATATTACTCCAGTCTTCCTTTGTATATTTGGATGTTTTTTTATTACTTTCCTTATAGGCAGAGGTATTACCGTATTTTTCTTTTATCTCTTCTGAATATTTTCTTTGATGCTCCTCTATTTCA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAGCATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //