Array 1 259361-261306 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHM01000005.1 Clostridium baratii strain 694-15 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 259361 29 100.0 36 ............................. AAAAAATAAAATAGGCTTATCATATTGTTTAGAAAC 259426 29 100.0 37 ............................. TTAGTTAAATACAACCTCTAGGACTTCCCCAAATCTA 259492 29 100.0 37 ............................. TTGTGTATCTTTATTAAGAACTCATTGTTATAATCCA 259558 29 100.0 38 ............................. GAAGTTTGTATAGTATCGAGAGAGGGGCTAAAGCCCCA 259625 29 100.0 37 ............................. TATCTTGTTGTACAAAAGAAGTTTTTTTCATTCTATA 259691 29 100.0 36 ............................. CAAAGATTATGCTAGAAAAATAGCAAAAGCTTCATT 259756 29 100.0 37 ............................. GTAAATACTACTATAACTACTCCTTTAGAACTTCCAA 259822 29 100.0 37 ............................. CATAATTCCATTCTAAAGTTGAACTTTGTACTTGCTT 259888 29 100.0 37 ............................. ATTAGTTTTCCTTTCTTAACTTTATCTTTAAATAGAT 259954 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 260020 29 100.0 38 ............................. TTCTCAATAGCGTTAAAACAATTTAAAGATTTTTATGA 260087 29 100.0 35 ............................. AAATTTAATATTGGGAGAATTTTATGATTAGAGTT 260151 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 260216 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 260281 29 100.0 38 ............................. AAAGGTATTAAATAATCATAAAAAAATTCCATAATAAA 260348 29 100.0 37 ............................. TAAGCTAAATCTGAGCTAATTGTATTACAAGAATCCG 260414 29 100.0 36 ............................. AGGATATTATTAGTCACACCAACAGGGAAAAGTAAG 260479 29 100.0 37 ............................. GATGAAAAAGTATTAGTTGGTGAAGGATTATTGAATA 260545 29 100.0 36 ............................. GAACTAAGACAGTATGGATTAGAATATGAGGAAATA 260610 29 100.0 37 ............................. TGACAATACTATAAAAGAAGTATTTAACAGAACTATT 260676 29 100.0 36 ............................. TGAAATAATACAATTTAATCTAGTTCTTATCGCTTT 260741 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 260807 29 100.0 185 ............................. GAACCTACACTAGTACCAACAGAATATCGTAACTAAGAATAATATAAGTTAACATAATATCCATATTCTTATTTAGATTAGTTATGTTTTATATTAATTATATTTAAAAAACTTTTATGTGAAGGTTTATTATAAAAATTATTGGAAAGAATTATTTGATGACTAATTTTTTATGATTTATAATA 261021 29 89.7 28 A......C.........A........... TATATAAAATATAAAATAATAGAAAAAA Deletion [261078] 261078 29 82.8 169 .......C........AA.....T....G TGCTGAAAATAATATTTCAGCACTTTATTTTTTATTACAAGTATTTCAAGTAAATTATAAGAAAATGTAATATATATTATTATAAAACTAAAAATAAACAATAATAAACAAATTTTAGGCTTATTTTGAATTTTTAAATTATAATAATTTGAAATATAATAAATTTATT T [261100] 261277 28 79.3 0 A.........T.A...AA..-........ | A,T [261300,261304] ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 26 29 98.1 48 GTTTTATATTAACTATGTGGAATGTAAAT # Left flank : AAGAATATAGACCTTTAAAGGCGTGGTGGTAAAATGTTTGTTATAATTACTTATGATATAAAAATTCAGAGAATAAATAGAGTTAGAAAATTATTAAGAATGTATTTAACGTGGACTCAAAATTCCGTTTTTGAAGGAAAGATAACAGAGTCTAAGCTTCAAAAATGTTTAAACGAAGTTAATAGCCTTATCGATAGAAAAGAAGATTCTATTTATGTATATAGAGTTCAAAATGAAAAAAATATAAAGAAAGACGTTATTGGAGAAGAAAAGAATTTTGATGAATTATTTATTTGATAGTATAATAAAAATATGAGATTTGCAGTAAACCGTAAAAATGATTAGATTGAGCAGAAGCCTTTAAAAATCAAGGATAGAGGTATGTTGTATACAAATTAAAAAAATAAGACTGAAGGTTTACTGCATTTGCTGGGATTATTTTTAGAAAAAATAGTCTATAAATGGCTTAAAATGGTCAAAAAGAGCTTATTAATTTTGGG # Right flank : TGTATGATATCTAATGAAAAGAAAAATAAGATAATAGAAAGGTTTAAAAATAATGATGATAAAAATATGTCTAAAATTGCTAGGAGACTTAATGTTTCCAGAACTTTTGTTTAGAAGTTATTAAAAGAAAATGGATTGATATAATATCTTGAATAGGTTTAAGTATTAATTTGAAAATTAACTCAATGTTTAATAAAAGTTTATTGAAAGAATAAATTTAAATTCATAATGATGAACTTTTATTATTATGAATTTAAATTTTGCAAAAATATTTTGATTTTAAAATTATTTATTAAATTTTTGGTTTTAAAATATATTTTACTCAAATAATTATAAAAAAATAATTATGGACAAAATAGGTCACTAATTGAAGGTAAAATATAATCATAAAATAAATTGACAAAATTTAATTATAGAGTATAGGAGGTGCAGGATGAAAATTTCTATTACAGGAAAAATGAAAGAAAAACAAATTCCAATTGGATATAGAATGTTTGTAT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 268259-268613 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHM01000005.1 Clostridium baratii strain 694-15 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 268259 29 100.0 36 ............................. TAGCAAGAGCAGTTCCTCCAAGTTCACCAGCCATTG 268324 29 100.0 36 ............................. ATAGTAGATATAACCCCAGGTTTTCTGCTAGATTAT 268389 29 100.0 36 ............................. CACATAGATACACTTTATTATACTGTCTCGCTTGAA 268454 29 100.0 36 ............................. GTTGATGACTTGCAAGGAGATCCGTGTTTCTTTATG 268519 29 100.0 37 ............................. TTTAAAGATGGAGGTCTTAAAGATAAGCAAGTAAGAA 268585 29 79.3 0 .T.....T...........TGCG...... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.5 36 GCTTTATCTTAACTATGAGGAATGTAAAT # Left flank : TGAGTGTATAGATAAATTAAAAGATATAAACATAATAAAACTAGAAAAAATCAAAATACGAGATACACTTAAAAGTTTTACAGTATCAGTAGGAAAATATGACTTAGAGGTTTTAGGAAAATCAGCATTATATAAAGAAATAGAAATAAGTGAATATGAGAAAATTCCAGTTATAAAATGTGAATATGGAGAATTAGGGTTTATAAGAAGCAAAGTTGAAGATAATAATATATATGATAATTTTTTATAATAAAATTAAGTTTAAGTATTTAGTAGATTAAATGATAAATTAATGATAATATTATAATAATATATTAATTTGCAGTCAATCTAAAAATAATAAGAAGCTAGCTAAAGCTAGTAAAATCAATAAGTGAGCAACACATTTGCTTGGTAGTGAAATTTAATACTAACGGTTTACTGCAAAAGAGATTAGAATAAATGAAAAATGATACTTACAAATGGCTTGAAATGGTGACAAATACTTGTCTATTTTTGGG # Right flank : TTTAAGATGATGTTGATTCTAAATCAGTCACGCTCAAAATTAACTTAATTATATTAATGTTGATAAATTATAGTATTAGAAGATAGGGAAGTAGCTATAAAATAGCACTTCCTTTTTCTATATGCTAAAATATGTATATAAAAAAGAAAAGGAGAAAATCCATGAGTTGTATATTTTGTGAGTACAGTAAAGAAGAATATATAGCAGAAAATGATTTATGTTTTGCTATTTTTGATAAATTCCCTGTTAATGAAGGACATGCTCTTATTATTCCTAAGAGACATTTCCAAAATTACTTTGATGCAACAAAAGAAGAGATTGCAGCAATGTATGATTTATCACAAGAAGTTAAACAATTAATTGATAATAAATACAGTCCAGACGGATACAATATTGGAGTTAATGTTAACCATGAAGGAGGTCAAACTATTATGCACCTTCATATGCACATTATTCCAAGATATAAAGGTGATATAGAAGATCCTAGAGGTGGTATTAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTATCTTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //