Array 1 7436-6332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEO010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-23 NODE_220_length_7438_cov_1.730953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7435 29 96.6 32 .............C............... GTGATCCGCGCCTATGACGCAATGGTAACGAC 7374 29 93.1 32 .............C..............T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 7313 29 96.6 32 .............C............... CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 7252 29 96.6 32 .............C............... GGCGTTTTATTCGACCTGAAAAAATGGATCGT 7191 29 100.0 32 ............................. ACATCTCGCGGACAATAGCGATTTCCACCGTC 7130 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 7069 29 96.6 29 ............................C CTTGTTAAATACAGGCGGCGGCGGGGTTG 7011 29 100.0 32 ............................. AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 6950 29 100.0 32 ............................. CAGGATTGGATTAATGAAGACGGGTACGAAAT 6889 29 100.0 32 ............................. AGATTGCAGAATTATATTTCACGCTGGCAGCA 6828 29 100.0 32 ............................. CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 6767 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 6706 29 100.0 32 ............................. GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 6645 29 96.6 32 .............C............... TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 6584 29 96.6 9 .............C............... CGGCCAGCC Deletion [6547] 6546 29 79.3 32 A.T.AAA.A.................... ACAGGGTATATGAGCTTATACGTCATGAACCA CG [6531] 6483 29 96.6 32 .............C............... TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 6422 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 6361 29 89.7 0 A...........TC............... | A [6334] ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.6 31 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1026-1785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEO010000716.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-23 NODE_716_length_1785_cov_1.927624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1026 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1087 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1148 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1209 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1271 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1332 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1393 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1454 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1515 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1576 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1637 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1698 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1759 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12022-10406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEO010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-23 NODE_80_length_13024_cov_1.740948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12021 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 11959 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 11898 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 11837 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 11776 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 11715 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 11654 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 11593 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 11532 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 11471 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 11410 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 11349 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 11288 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 11227 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 11166 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 11105 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 11044 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 10983 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 10921 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 10860 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 10799 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 10738 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 10677 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 10616 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 10555 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 10494 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 10433 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //