Array 1 717-385 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSB01000417.1 Candidatus Hakubanella thermoalkaliphilus strain S43 HKBW3S43_000000000417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 716 37 97.3 36 ................G.................... CATGCGCAGAGGTGCCACCCCTTCAATGGTTATCTC 643 37 100.0 38 ..................................... TCTTTTTTGAGTTCTCGGAGGACCCTTTGCAGTTCCGA 568 37 100.0 36 ..................................... CTGACTTTCTCTTGGTGTTGTAATTCTCCACATTAG 495 37 97.3 37 G.................................... CTACCTGATAACTTTTCTTCCCTCTCTTTTTCGAAAC 421 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 37 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : ACG # Right flank : CTTATTCTGCTTTTCTTGCAGGACAAGATCTTTCAGCAAAAATAGCCCTCTGGAAAGATGCCGAAATTTATAAGAAAGAGGCAAAGAGTTGAAATAGTCAATTGGGTGCCAGGACATGAATGATAGTAAATATCACAAAAACCTACAGAGGTTACCAAAATTTTGAGCGTGCTCAGTGAGGAGACGTTGACATGTTGGGAAGTTTTGTGGTCCGGGTGCGGCCGATGAAAAGTGTCTGTTATCAGTATTGCACAGGTAGACTTCTGCATGGTCTTTTTCTGCATCTTATGGAGAGAGTAAATCCCTCTCTGGCTGGGGAACTTCACGATACCAAAGGGCAGAAACCATTTACCGTCTCTCCTCTCTTTGGACATTTCCTGACCGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 1 6398-6696 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSB01000051.1 Candidatus Hakubanella thermoalkaliphilus strain S43 HKBW3S43_000000000051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6398 32 100.0 34 ................................ CTAGGGGAATCGCTAGTAATCGTCACCCATTGAG 6464 32 100.0 36 ................................ GAGATATAAGCGAAGAATGAGGTTCAAGGATAGCCC 6532 32 100.0 35 ................................ ATTAGACCCCAAAAGAAAGAGTGACCCTCGCGGGC 6599 32 100.0 34 ................................ TACTCGTCGCGTCTGCGTACTGGACAATCATCGG 6665 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : CCGTTTTTATGGCGATGAGGCTGGCTAAAAAAGCACTTTAACAACAGAATGGGTGTATGTGGGGGAGAAATGTTGGTTCTAATAACCTATGATGTGAGAACAGATAGCGGAGAAGGGCAGAGAAGACTGCGCAAAGTGGCCAAGGTTTGTGAGAACTATGGTCAACGGGTGCAGAAGTCCGTCTTTGAATGCCTGGTAGACCCAAAGCAATGGGTAAGGATAAGAAACAAGTTAATAGAGGAGGTCAAGACGGATGAAGATAGCTTGCGCTTTTACTTTCTGGGCAAGAACTGGAAGCTCAGGGTAGAACATGTTGGCGTCAAAACCGCCTATGACCCTGAGGGACCGCTAATTGCTTAACAGGGCTGTCTGCGTACTTCAAGTAAACATTGTTTACGAAGGGGGTTGGCGAGCTTCAAAGCAGCGTTTTCTCTGGTTTTTTTTCGGCAGACAGCACCAGGGAACTGGCTATTTTGAATACAATTTGTGTCAATAATGCG # Right flank : CATAGCTTGACTAGCCTGGATTCCCATGTTAGTTTTTTAACCTAACACCATGGAGCATTATCCGAAGACGAAGCGGAGTTTTTTCCCTCCGAGCCATGGTATGGGAATATCAATATTGGTTCTTCTCCCTAGAGTATGGAGTAAATAGCGACCATCGTCTATCCTATATGCTGGTTGAAAGTAAAACAAGCAGCATAGAAAGGAGAAGACGATGGTCAAGCAAGAGTATATCAACCAGTTGGTGGGAGTGCAAGGACACAGGGTGCTGGCCTTACACTTTGGCGAGAACAGAAAAACAGGAGATAAAGAGTTGGTGATCGAGCTGGGAAGGCACGAGAGTAAATATCGCTGCCCCTGCGGCAGGGAGTTGGACACCTACTACGATCGCTCTACCCGCATGGTGAGGGACCTGCCTTACGGACCCTACCAGCGCTCCTGGCTTTCTTTCCCCCAGTTCCGGGTGGCCTGTCCCGACTGCGGGGTGGTAACCCAGGAACTTC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 1-407 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSB01000510.1 Candidatus Hakubanella thermoalkaliphilus strain S43 HKBW3S43_000000000510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1 37 91.9 36 ......................GT.........C... GATAATTGAGTTGATCCTTCAGGTAAAATATTCACA 74 37 100.0 36 ..................................... TGGTGACAGATTTTGTCACGGTAACCTATCTATATC 147 37 100.0 37 ..................................... AGTACTTGCCAGTCACATTAGCGTTAACATTTATAAC 221 37 100.0 40 ..................................... CTTTGAGCAAGGAGAGGCGCACAATATCCCCGCTTACGTC 298 37 100.0 35 ..................................... TATTCTTAAAGCTTATGGCGCCATGAGATAAAAAT 370 37 86.5 0 ....A.............TA.....G..........T | G [402] ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 96.4 37 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : | # Right flank : AGAACATAAGGGTGTAAAAAATTGGACGGACTTTATCATACGAAGAGAGCACGACACATAACACGAGTCGAAGACACAAAAGACGCTAGATACAATCAGTAACCAATGAAACAGAGGAGCGCAGAGATCAATAGACAAGAGGTGAGACATCTAGAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //