Array 1 4228-4703 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGB01000055.1 Nocardia jiangxiensis NBRC 101359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4228 37 100.0 35 ..................................... ATCGACCCCGATCATGTGGTGGCCGTGACGGTGAA 4300 37 100.0 36 ..................................... ATCACGTACTTCAGGTCCTGGCTGTTGAGCCAGCGG 4373 37 100.0 35 ..................................... AACAAACAGGCGGGGGACTGGCTGGTCGGCGCCGG 4445 37 97.3 38 ...................T................. CCTGGGGCGGAACATCTTCCGCCCGGCGACGTGCGGGA 4520 37 94.6 37 .........A...A....................... GGGTACGCCGAGGCGATCACCGTGTATCCGCTCGCGT 4594 37 97.3 35 .......................A............. GCGGTCAGCTGGATAACGGGCGACGGGTGGCGCAT 4666 37 91.9 0 ........................A.C....T..... | C [4692] ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 97.3 36 GTGGCGCCGGGCCGCAAGGCTCGGCGAGGATCTCAAC # Left flank : GATCGTGACGAGGCGATGAACACCGCACGCGCACGCCATCGAGTCGCGGTCGAAAAATTGAAGCACAGGCAAGGTTTGTGCCTGGCGCGGATGAGTCGACGGGGCGAAACGAACGCGGCTATCTCGAACCGCACCGGGCTCACCACTCGCGAGATAAAGCAACTGATCAGCGAATTCTCCGACGTTGAGGCTGACCAGTCGTCACAAGGCCCGAACAGTCGCCCGGCGATCGATAGATCGAACGACGGTTGGCCAGCGTCTGGCATTGATGCGGGTGACATGCTGGAGCAGAGATAGACAAGCTCCTGCTTGTGTGGCGCGTGCTCCGCGGTGAGGGCGCTCCGGTTCTGGTACCCAACGGATCTGCTGGCTTCGGAACCCTAGGTGCGACCTCATTTCCAGGGAGGTTCCGAAGTGGCGACCAGCGCGGATTCGGTTGTGACAGACGTATATTTGAGGTTGCTCGTTCAGTGGATGATTGAAATTGCAGGTCATCCAGG # Right flank : CGGCCACGACTCTTCCGGGAAAGTCTGGACTCATCACCTGCGGTGCTGACTTCGTCGAGGTTCACCCATGTCCCTGCCTCGCTATTGTCGAAGATCTTGTGCACCAATTTCGGGCCCAGCGCTGTCTGCGCTCCTGGTCACGTGCGATCCAGTCCCGGCCCTCGGTGGCAACAGCTTCCAATACCCGAAGTGCGCGGTCGAACCCCGCGGTCTGCACGGTTGCGGTCTCCTGTGCCTCATCGATGTCTGGTGTCTCGTCGTCGGTGGCGCTCGGGTGTTCTTTGACCTCGGCGATGCATGTGCCGTCGAGCAGGGTTAACCGGAACACCCGCCTGCGGGTGCGCTCGATGTTGGCTCTGCCGTCGGCCAGGTGGGTGCGGACGCGCTTCTCTGTTACCGAGGCCGATGCGACGGCATCGTAGGAGAACATCTGGTGTTGCTCGTTGCCCACATCACCCGTGGTCAGGTCCAGATGTGTTCGTGTGGTGCGCATTCCGTAT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCGGGCCGCAAGGCTCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.50,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 3158-3471 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGB01000135.1 Nocardia jiangxiensis NBRC 101359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 3158 28 100.0 41 ............................ GAAATCACCTTGCGACCGCGGATCGTGCCGCGCGGGCGTCA 3227 28 100.0 44 ............................ TCGGTGCTGGCGGGCACTCGCACCGCGGCGAGCGCCTGGCTCCG 3299 28 100.0 44 ............................ TTGCCCGGCGCATCGTCAGCCGATGCCGGTGCCGTCTGGCGCCG 3371 28 100.0 45 ............................ GGTCGCTGTGAGCAGAACGCGGCCGTCATCGGCGACCTGGCGCCG 3444 28 96.4 0 ......G..................... | ========== ====== ====== ====== ============================ ============================================= ================== 5 28 99.3 44 GACCTCCGGGTCCGGCGGGAATCTCAAC # Left flank : GATCCGCGAAGAATCGGTCCCCCTGGTTATCGCCGCCAACGAGAGCGAGGCCCAACGCATCGACCCGCTACTTCAAGCAGTCAGCGATGGAACCATCACCGCCAGAACAGCTCTCAGAAAACTCCAGCCATGGACAGTGCAGCTTGGCACCCAGGTCGCCCAGCGAGCAGACGTCGCAGCATCGATCGACAACGTCGTCGGAGATCTCGGCCGCTGGTGCGGCACCTACAACTGGAATGCCGACACCTGCCAGGGTGTAGGACTAGACGAAGATGCCCTTGAAACGATTCTCTGACAATGCGTTCAGGGCTCGCCATCGTCGTAACCCATCAGCCCGCTGCGCCAAGAGCCGTGGCATCCGGTTCGGAACCTCCAGTGCGACTGGAATTCCAGGACCGTTCCCAAGTCGCGACCTGCCCGAACATCTACCATCCGAAGCGAAATGCTCACCCGCTGCGCCGGCTATCGCACGAAAGTGCAGGTCAACCAGCCTGGCGTCA # Right flank : CGTGATCGTGGCCCGCAACGAGCACGGCGTGATGGCTGGCGCCGGACCTCCGAGTCCGGCAATCTCTACGGCGGTTGGGTCGTGCTGCGCACGTGATCGACGGCAAGCTGCCTTATCGAAACGATCGGCTTTGTCGTTGATGGAACCAGTATCACGAGAGGCTCATCGATGCTGAGGGTGCTGCAGGCGGCAGCGGTAAGCGCCGCTGCCGCATTCGCCGGACTGGGCGCTTCGCCGACGATGGAGTCCGTGCGGATGTCGAGTTGTGCTTATAGCGCCCCGCTGACGGTGCGAACCTGCGACAGTCGTCTACGTCCGGGGTCGGCCTTGGGGCCCGCTATTCCGGCGGCGGTGATAGACGCCCGCTCATGTCGCGGGCTGTGCAGCATGTCGCTGAGCCCTAGGAATAAGCACCCCGCTTGCATCAACTCGCTCGAAGCGAGAATTGCGGTACTCGAATCCTGTTGCGGTTGTCACTGGAACCTCAGTGCCGTGAAGAT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCTCCGGGTCCGGCGGGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 185-445 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGB01000010.1 Nocardia jiangxiensis NBRC 101359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 185 38 100.0 36 ...................................... AGGCGAGTGATCCGGTTGACCGTGGATATCTGACTA 259 38 100.0 36 ...................................... GACCGCGACGGGGTGTGTGTGGACAACGGGCAGCAC 333 38 94.7 37 ...............C.............A........ ACGTGAGGATCCTGTCTACGTGATCAGAGAGGAAGCA 408 38 89.5 0 C..............C......T....G.......... | ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 96.0 37 GGTGGCGCCGGACCGTAAGGCCCGGCGAGGATCTCAAC # Left flank : TGTTGTTTGGAGGTTGTTCGCTCGGCAAGGAGGGCACTGAACATCGGATCGGCTGCTTCGGAACCCCCAGTGCGCCTATATTCCCAGGGAGGTTCCGAAGTGGCGACCAGCGCGGATTCAGTTGCGGCAGACGTATATTTGAGGCTGCTCGATCAGCGGATGGCTGAAACTGCAGGTCATCCAGG # Right flank : CGATTTCTGACCACCGAGAAGTGAACGGAATCAGCGACTACCAGTTAGAACGGCGGTTCGTCATCGTTGCTGCTGCCTCCGGAGGAGCTTGAGCCCCAGGGGTCGTGGCCACCGAAGCCCAGACGTCCTCGACGCCGAGCTTGTTCCTCCGCTTCAGCTTCGGCCTCCTGCCGGGCCCGGTCGGCACGTGTCCGCGGCAGCGAGGTGACCTCCCCGTGGCGGGCCTTGCGGTAGCGCCAATGAAGCTCGTCGCGATGGGACTGTGTTGGCGGGTCCCACCGATCGCGCTCGTCGTCGGGTTCGACGTCATCTGGATCTACGTTGGCGATCTGGCACAGCGCCAAGAAGATCACCTCCACGGTCTCCCACTGCCCGGGCAGGCTTTTTGCGATCAGAGTGCGCCGGACCGTCTCGGGGTTGGCGGTTCCCTTCTGCTGATCCTCGGGCAGACGCTTGATGACTCGGGCGATTTCCCGCACCGGAGGAGCATCTGCGGCGAT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGCGCCGGACCGTAAGGCCCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.40,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3736-4714 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGB01000010.1 Nocardia jiangxiensis NBRC 101359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3736 37 100.0 32 ..................................... TCGTAGTACGCGGTCAGCTTCTCGATCGCTTC 3805 37 97.3 36 .....C............................... GAAGGCCAGAATCGCGGCGGGCCCGCCGCTGTCGGA 3878 37 100.0 35 ..................................... AACGACTACGAGCCGCTCCGCTCAGAGCGCTACGC 3950 37 100.0 34 ..................................... TTCGATGACCTCGACGACGGGATCCTCTGGTCGC 4021 37 100.0 38 ..................................... ACCTCCGCCGAGGTCGCTGATGGCGGTTCGGTGCTCGA 4096 37 100.0 35 ..................................... CTCACCGAACTCGGCGGGACCAACGGTGCCGACCA 4168 37 100.0 34 ..................................... GTCGGAACGATCACCGAGCCCGCGCCGGCGAAAC 4239 37 100.0 35 ..................................... GGCATCGCAGACGCGGCACCACGCGGCGAGGTCGG 4311 37 100.0 36 ..................................... GAATCGGAACAGGCTGCCACGGCGTGGCTCGACCTG 4384 37 97.3 37 .............................G....... ACGGTGTTCGGTCCGCGGCAACGGCCCGGGATGGGGA 4458 37 97.3 36 ......T.............................. GTCACGATCGACAAGACGCTCGTTGAACGTGCGCAG 4531 37 97.3 36 .....................T............... CTCAACCTGGGCACGCGGACGGGCTCGTGGGCGCTG 4604 37 97.3 37 .................................A... GGCATGAACTTCGCCGCATCGATGGCCGGGGTCGCGA 4678 37 91.9 0 ..........G...T........C............. | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 98.5 36 GTGGCGCCGGACCGCAAGGCCCGGCGAGAATCTCAAC # Left flank : AGGTCCCGGTCGACGCTCAGGTTCACGACCTTCAGGGCAACTGCACGGGCGAGATCACGGTGTGGGTCACCGACGGCTACCTCGCCGGAATCGAATACGCCTGGATCACTGATGACCGGCCCCAGGAATTGCCGCCGCTTGCACAGGTCACACTGGTCGTATGACCGAGGGGGCTATGTAGCGGCTCTATATTGCTGGCCACGCCAGGGCCGAATCAAGTGACTAAAATTGGCTGCCACTGCCGATAACGCCGCAGCTCAGGAAGTATCGGCCTGCGAATGTGGCACGAGCGGGCAGGGTCGCAGCGCAGGGGGCTATGGTTCGCGCGCTGTTCGCTCGGTATGGAGGGTTTTGAACATCGGATTCGCTGCTTCGGAACCCCTAGTGCGACCACATTCCCAGGGACGTTCCGAAGTGGCGACCTGCGTGGATTCGGTAGTGGCAGACGTATATTTGTGGTTGATCGTTCGTTGGACGGCCGAAACTGCAGGTCATCCAGG # Right flank : CAGCGGCCCGGGACAGACACACACCTTTCGGGACGATGTGGTGCCGGGCCGTGAGGCTCGGTGCCTCCGTTGCCCTCGATTGCGAACGTTTGGTCTTCCGGTTCGTTGATGCCGCAGCACTGGTCGGTCAGGGGTTATTCGGTTTGTCGTTGCCGGCGTGCAGACCTTCGACCACTGAGTCGAGTCCGAGCGTTGGACGGTAGGTGCTGGGACGGACTGCAGGGAGTTGACGCTGTTTTTCGGCTGCTGCTCGCTGCGCATCGAGGGTGTGCTGGTTGGCGGGGGTGTTGGTGCCGTGGTCGGCCTCGGCTGCTGCGGTGGCCTCTGCTTCGCGTAGGCGCGCACGGATGCTTACGGTGAATCCCTGCATCCAGCTGATCTGGTGGTCTCGTAGTGACAGGCCGGTGGACGGTGTCCAGGGGGAGTTCACTGCTTGGCGGAGCATTCGTGACAGCAGGGGGGCGTACAGGATTTGGATGCGGTCGAGGTTTCGCTGCGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCGGACCGCAAGGCCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.30,-16.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //