Array 1 1571-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJZ01000002.1 Moraxella catarrhalis strain 29/50/1 NODE_2_length_286064_cov_21.094625, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1570 28 100.0 32 ............................ GTCCAAGGCTGGCTGTCTTTTTGGTTTGATGA 1510 28 100.0 32 ............................ TTGGTCAAACAAGGAGAAAAAAGATGAGTAAC 1450 28 100.0 32 ............................ AGCAAATACAGCCAAAAACCAAAGCCAAGATA 1390 28 100.0 32 ............................ ACCTTAATCAAACCAAAACTGATGACTATAGA 1330 28 100.0 32 ............................ AGCAAATACAGCCAAAAACCAAAGCCAAGATA 1270 28 100.0 32 ............................ ACCTTAATCAAACCAAAACTGATGACTATAGA 1210 28 100.0 31 ............................ GCGATGGGCGGTATTTGATGATGTATTTGAT GC [1204] 1149 28 100.0 32 ............................ ACCATCTACAAGACCATATATTTCACCCTCTG 1089 28 100.0 33 ............................ CGCTAAGAAATCATGGAACAATATTAAACGCAG 1028 28 100.0 32 ............................ TTGAACACACGCTAACAACAAACAATCAAAGC 968 28 100.0 32 ............................ TGCTCAAGCGAACATGGTAATGCGTGTATTTC 908 28 100.0 32 ............................ ATCAGCGTCTGCCGATGTTGTACCACTTGCCC 848 28 100.0 32 ............................ TGATAGCATGTCTAGCACTTTATCAGCGTCTG 788 28 100.0 32 ............................ AAAGTTACTTGTGTTTTAGTTTGGGCAAGATA 728 28 100.0 33 ............................ ATGGCGAGCAGTCCTACCCAAATGTAGGTCAGT 667 28 100.0 32 ............................ TAGAGCAAATTCAGACGCTGCTTTTGTTTTAT 607 28 100.0 32 ............................ TGTATCCAAAAAGACAGTTATATCAATAGCGG 547 28 100.0 32 ............................ GTACGGTTTTCTTACCTGTCCAACCTTTGATA 487 28 100.0 32 ............................ AAAGAGCGTGGCGGAGGTATGCTGAATGGACA 427 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 367 28 100.0 32 ............................ AGACCAAATCCGCCATGCTTGTTTACTACCAC 307 28 100.0 32 ............................ TTATCGTTTTTATGATGCAGTGACACGCTTTT 247 28 100.0 32 ............................ TTAAAGTATATCAAGAAGTTAGTAATGTTGTT 187 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 127 28 100.0 31 ............................ AAAAGTTCGGTAAAACTTTTAAGTTATCTGT 68 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : AAACCGCTTTAAATGCAACAGATAAGGCATCTGTCTTCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61551-61402 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJZ01000010.1 Moraxella catarrhalis strain 29/50/1 NODE_10_length_61588_cov_21.771562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61550 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 61489 28 100.0 32 ............................ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 61429 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTAGAAAAAAAGTTCGGTAAAACTTTTAAGTTATCTG # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 549-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJZ01000059.1 Moraxella catarrhalis strain 29/50/1 NODE_68_length_548_cov_23.795724, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 548 28 100.0 31 ............................ AAAAGTTCGGTAAAACTTTTAAGTTATCTGT 489 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 428 28 100.0 34 ............................ AAAAAAGAAAAACCGCCAGCACATGCCAGCGGTT 366 28 96.4 32 ..................T......... AAATCACGGATAGATGATGTATGACCATTCAC 306 28 100.0 32 ............................ ATATTGAAGCGTCTTAGATAAATCTCTAACTT 246 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 186 28 100.0 31 ............................ AAAAGTTCGGTAAAACTTTTAAGTTATCTGT 127 28 100.0 32 ............................ ATATTGAAGCGTCTTAGATAAATCTCTAACTT 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : | # Right flank : ATCATTATTATCGCCAAAACTCACCCAGTCAAACTTCACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //