Array 1 26053-26574 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOY01000014.1 Nitrosomonas halophila strain Nm1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 26053 36 100.0 34 .................................... AATGAGTGCGACGCCGTAATGATTGGTTGAGACG 26123 36 100.0 33 .................................... GGATCTGCTCTTTGCCTTCTTCTTGTGCCTTGT 26192 36 100.0 35 .................................... AGCATCCCGAGAGACAATGAGTTGGAAATATAAAG 26263 36 100.0 32 .................................... CTAAATTGTGCCTGGGCTTCGTCCAGCTGTTG 26331 36 100.0 33 .................................... GCCTCGAATTGGTTGGTGCCGTCCGGATCCGGC 26400 36 100.0 33 .................................... GCAGCGGTTTTATCCCGCTCGCAATCGAGGACC 26469 36 100.0 34 .................................... GCGCTGGCTCAGGGTAATTGAATCCGCTTGCCAC 26539 36 88.9 0 .............................C.A.A.T | ========== ====== ====== ====== ==================================== =================================== ================== 8 36 98.6 34 GTTGAACTACTGCCCTGATTTAAAAGGGATTGAGAC # Left flank : AGGCACCGCTCACACGAATTACCCTGCAGTTCGTGACACCGCTCAGGCTGCAACAAAATGGCCACGCGCTGCCACCTGCCAGACTCAACGCCCATATCCTGCTCATGGCGTTAGTCAGACGCATCAGCCTGCTGGCTGAAATGCATGCCGGCAAAGCACGCTATAATGCCGCAGAATTTACCGCCATGGCAACGGCAACCAGCCAGATTAGCGGCCAACACCAGATGAGCTGGCGCGACTGGACACGGCATTCTTCGCGCCAGCAGCGCATCATGCGGTTGGGTGGCTGCGTGGGCGCCTGGCAATTAAGCGGTAATCTGGTACCATTTCAGGAAGCGCTGCATCTCGGAGCATGGCTGCATGTCGGCAAGGAAGCCTGTTTTGGTCTTGGTAAGTATCGCATTCTGGCAAATAGCGAAACATAACTATGCTTCAAGCAGCCATTTCCACGAACGCCCATTGCAACAAACTGATTAGCAAGGATAAAATTGCCACGATGA # Right flank : TTCCGTCATCAGAATCGGTCAGAGCCATTGATGGCGGTATTGCTCTGACTAAGGGCTCATTAATAACGAGCCCTTAGAAATGGGTGGTTATCCAAGAACGGATAGCCGGCAATTGGCAAGCTTGTCAGCCAGCAGACTGCGCCAGTATTTCTCTATACTCCCCTACTCTGCAGACAGGCGCATGGCGCCAACCAAATGGGTTGCCTCGCAAAGACGGCTGTCTGACTGTTACCCCCCCATCCTGCCCAGAAGGGATTGGGCTCTCAAAACCGGTCGCTTTTATTTCCATTTTTCAAACTATGAGAAAGAAACAGCAAAGGGATCCCGTATTGACAGCCATTAAATGGCTCTTCTTTCTGTGGCTCGTGATGCGCGTGACTACTGTTATCTTGATAATTATAGTATTGGGCAGAATTTATTTTGGTTGGCGCGCCATATTTCGGTAACTGTAACTGCTGATCTGGTCCTGGCAGTCAAAACCAATATTTCTCTTGTAATTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTACTGCCCTGATTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 36306-31817 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOY01000005.1 Nitrosomonas halophila strain Nm1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 36305 37 100.0 35 ..................................... GAATGGGAATTTCTGAACGAACCGGCCTGGCGCTG 36233 37 100.0 34 ..................................... TTAAAAACGGTCTTACTGACGGCACTTTTTGCAT 36162 37 100.0 34 ..................................... AGCGCTGCGCCCACTGGCAACTATTACATTGAGC 36091 37 100.0 35 ..................................... TCCAGAGTGTGCGTAACGGTAGGCTCTGCTTGCTT 36019 37 100.0 34 ..................................... ATTTTATATACCCTTGGCGCGTAGGTGTTTTTTT 35948 37 100.0 34 ..................................... AACTTGCTTGCGCCTTCGGCAAAGATACCGCCGC 35877 37 100.0 34 ..................................... ATGTTAATGTATTAGCGTTGATAACTGTATTGGC 35806 37 100.0 33 ..................................... ACCGGCCTTCTTGCCGAGAGCTACAATCGGCAG 35736 37 100.0 35 ..................................... ACTTTGAATGTCCTCATCCTGGATGACTCCGGCCG 35664 37 100.0 36 ..................................... CACCGCCCCGGCCCGTTTGCTGCAGCTCGAAGTGGG 35591 37 100.0 34 ..................................... CAGCTTTTGCGCGCAAGTGTATTTGCGTTGGCCT 35520 37 100.0 34 ..................................... CGGTGTAGGCGTAGTGCGGGTCTGATTTCATGGT 35449 37 100.0 35 ..................................... CACGATTTTCCCGGTGATCACTGTCTGCAGTTGCG 35377 37 100.0 35 ..................................... TGACTCTAGCGAGGATTTCCGGGCATCGAGACCTG 35305 37 100.0 35 ..................................... AAAAAGCGATGGAGACAGCCAGATGATGGGTCCTT 35233 37 100.0 36 ..................................... CGTTTATCATTTATCGCTCCTGGCATCGCTCCTGGC 35160 37 100.0 36 ..................................... CGTTTATCATTTATCGCTCCTGGCATCGCTCCTGGC 35087 37 100.0 36 ..................................... CGTTTATCATTTATCGCTCCTGGCATCGCTCCTGGC 35014 37 100.0 36 ..................................... CGTTTATCATTTATCGCTCCTGGCATCGCTCCTGGC 34941 37 100.0 37 ..................................... TGTTACTGTTACTGTTCTGATAGCATCAACAGCGGCG 34867 37 100.0 34 ..................................... AGCCGTCCGGTTGCGTTCGTGTCCGGCAATAACG 34796 37 100.0 35 ..................................... ATAGACATGACCATCCGATCCACCCATGAAGGCCC 34724 37 100.0 36 ..................................... TGGTTCCTGTTGTCTTTGAACCACTCAATAACAATG 34651 37 100.0 35 ..................................... TTTATCGCGTTACGAGGCGAGCTGACCGAGTTTAT 34579 37 100.0 35 ..................................... AGCCAGTTATGAGCGGTGGATTATTGGAGGACCCG 34507 37 100.0 35 ..................................... CAGCTTTTGCGCGCAAGTGTATTTGCGTTGGCCTA 34435 37 100.0 35 ..................................... GTACCGGTAGGCTCTGCTTGCTTCCCGCTTGGCTG 34363 37 100.0 34 ..................................... CTGGCTGGCGAGTGTTGCTCCCAGGTTGGATCCG 34292 37 100.0 34 ..................................... AGGGGACGCGGTGTCTATCTCGGCAAAAAATCCT 34221 37 100.0 34 ..................................... AAAGGTCGGGGGGTGTCTGCAGAGATCCCCCCGA 34150 37 100.0 34 ..................................... CAGGTGATGTTTAAGTACTGCTCTCCAACCGCCG 34079 37 100.0 33 ..................................... GCGTAGAAAACGATACCACATCGGCTATAAATG 34009 37 100.0 34 ..................................... GAATCATTTATTGCCAAAGGTTCGACGCTGCCCG 33938 37 100.0 36 ..................................... GCCACCATCCTGTAGTACCATTGCCACCAGCGCGAC 33865 37 100.0 35 ..................................... CAGGTGACATTTAGGTACTGTTCGCCGACTGCTGG 33793 37 100.0 36 ..................................... GTACATGCCATAGTGCCGCATGGCCCGGTAGACAAT 33720 37 100.0 34 ..................................... TGGTAATGCTTCTCCTATTGTTGCTGATACTGAA 33649 37 100.0 35 ..................................... TTCCAGTGGAATCCCGGCCGCCGAGGCCACGCGTG 33577 37 100.0 34 ..................................... ATGAATAAGGGGTGCCGAGGCTAGATCCGTTGAG 33506 37 100.0 34 ..................................... TTGAAACGCAAGCCGGAGCTGTTAAAGCAGATTC 33435 37 100.0 34 ..................................... CTGGCTGGCGAGTGTTGCTCCCAGGTTGGATCCG 33364 37 100.0 34 ..................................... AAATCGATTGATCTTGAGTGATTCCGTGCCGCTG 33293 37 100.0 34 ..................................... GAGTCGTTTATCGCTAAAGGGTCCACTTTACCCG 33222 37 100.0 35 ..................................... TCTCACCGCGCTCCCACTGTTGCCAAGAGCGACGG 33150 37 100.0 36 ..................................... GCACAGGTCGCTGATTTCAGCGGTAGCCGCTTTGAG 33077 37 100.0 34 ..................................... AGCTTGCACCGTCCCGGAGGAACCGGGATTCCTG 33006 37 100.0 34 ..................................... ATGCTAATATTATTGTGGATGGTGATGGAGACAA 32935 37 100.0 34 ..................................... TTGTAATAATCCTGGTAATGGAAACCCACCACAT 32864 37 100.0 34 ..................................... TGCTGTAGCTGAAGCTGTTTATAGAGAAATCACG 32793 37 100.0 36 ..................................... GTTTGTGTCCGGGTTGACTGATGGTGTCAAATCCGG 32720 37 100.0 34 ..................................... AGTAACACATCAACTCCAACTGCTATCCTACCCG 32649 37 100.0 36 ..................................... ATGCCGGGTACGCCCTCATCGTTTGCCGGTGGCGGG 32576 37 100.0 34 ..................................... GTGAAAGTTTTACCCCATGGATTTTGGCGTCCAG 32505 37 100.0 36 ..................................... CAGCAGTTTATTTAGTTCCGGCGCGCAGAAAACGCC 32432 37 100.0 35 ..................................... CCGGCTAATCCAGGTGATCGGATTGAGGGTATGAT 32360 37 100.0 34 ..................................... GCACGCAAGGCACAACTGACATTCCCACTCCTGA 32289 37 100.0 36 ..................................... CTCTTATAGGGTCGTAATCCAGACCGATCTTATTAG 32216 37 100.0 36 ..................................... AGCAGCCGCTCCTGGTTCAGGGCAACGTTGTCCGTG 32143 37 100.0 35 ..................................... TACGCGTATTTCCGTATAGCCCGCGATGTTAAAAG 32071 37 100.0 36 ..................................... ATTCGGTTGTATCGGGACGAGGCGCGCAACAGCGCG 31998 37 100.0 35 ..................................... CTCCGAGGCGCTCAATCGTCTGGTTGATGGCGTGG 31926 37 100.0 36 ..................................... ATTACCTGCGCCTCATGCATTGTTCGCCCCTTTGCG 31853 36 73.0 0 ................AT.TC.AA...TC.A.-.... | T [31828] ========== ====== ====== ====== ===================================== ===================================== ================== 63 37 99.6 35 GTAGCGCCCGGCCATTCGGCTGGGCGAGGATTGAAAC # Left flank : GGTTATATTCCTTTTCTTGTGAGGTGATCATGTTGATTATCGTGACCTACGATGTTTCGACAGAAACCAGAGAAGGCCGGAAAAGGTTGAGACGTGTGGCCAAGGTTTGTGAGGGACACGGTCAGAGAGTGCAAAAGTCGGTATTTGAATGCAAGGTCAATTTGATGCAATTCGAGGAATTGGAGCGACGGTTATTGGCCGAGATTGATGAAAAGGAAGATAGTCTTCGGCTTTATCGTTTAAAGGAGCCATTCGAATTGCATGTGAAAGAATATGGTAATTTCAAGGCTGTAGATTTTGAAGGCCCTCTTGTTATCTGATTTGCGCGGATGTCAAGCAACCGTAAAAATACAGGGATATTCGCGCTTCTGTTATCTATATGAAAAATAGACACATTCCATCAGGAAATCAAAATTCCTGCTCTCCTAAAAAGCTGATGCATATGGGTTCGCGCATTGGCTACAATTTTATTTGCTGTATGATGGAGTTGTAGTTGTACT # Right flank : ACTCGGAATCCCGTTCTGACCGGGTTTGTTTTTACGCCATACCGGGTTTACACTACTTATCCTAAAGGTTGGGCTGTGGTAGCTCGGAGTCTACGAGCTTGGTCTTCAGTGATCCTGAATGAAGGGATGTCCGGCTTCTCAGCTTTTCCGTTTCAATTCTCTCGTGGGATCGTGAGATAGGTTGTCAGTAAATTGATCTCGATGGCTGCTGAATGCTGCTTACTTATTACTTATCGATGGATGTGATTTCACACTTTTTTGAGGCGGTTGGGTACTTGGCTGCCTTGGCGGTTATCCGGGCCGATCAGATGAGCCGGGTTGAGGCAATCATTGAAGAACTTTTCTCAGCCAGCGTGAGATGTCGGCTAATTCAGGGTCGCAAACAGCATGTGCCATGGGGTATTCATGCCATTCCACTGAATGGCGATGCTCGCGCAGGTGTTGTTGCGAGGTGTTGGCAAGTGCGATGGGTACAACGGGGTCTTGAGTGCCATGTGCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGCCATTCGGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-17.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //