Array 1 70189-72402 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMJ01000005.1 Neisseria meningitidis strain M29615 M29615_CHA4080A13_cleaned_ctg_9948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 70189 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 70255 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 70321 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 70387 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 70453 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 70519 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 70585 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 70651 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 70717 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 70783 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 70849 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 70915 36 100.0 30 .................................... ATGTACATGATTTGGCAGGATGGGCATTGG 70981 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 71047 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 71113 36 100.0 30 .................................... GTAAGTGCTTTATTCATTATGGTTTCCTAG 71179 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 71245 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 71311 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 71377 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 71443 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 71509 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 71575 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 71641 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 71707 36 100.0 30 .................................... AACACGCGCAATCCCCCTTGCACGGTATTC 71773 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 71839 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 71905 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 71971 36 100.0 30 .................................... AAGATGCGAAAATTAGCGCGGGACAGTGGT 72037 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 72103 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 72169 36 100.0 30 .................................... GATTGAGATTTTCAACGAGCAATGCTTTGA 72235 36 100.0 30 .................................... TGCCAGCCCGGGCGATTTCGAGGCGGTCAA 72301 36 100.0 30 .................................... GCACCGCCCCCGAAACACAAGAAAAAACTA 72367 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //