Array 1 1553916-1555025 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU659150.1 Providencia alcalifaciens strain 2019-04-29290-1-7 isolate 2019-04-29290-1-7 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1553916 28 100.0 32 ............................ AAATTGACCATGAACATTAACCTCAAAGTATT 1553976 28 100.0 32 ............................ TTTCCAATATTGATTGATCCAGCGGGTACTGA 1554036 28 100.0 32 ............................ TAGCCCGATGTCAACCCATAACCCATTAGGGT 1554096 28 100.0 32 ............................ TGTAGACGTTTGTACGCTTGATAACCCTTCTC 1554156 28 100.0 32 ............................ ATTGACGCTCCCCCCTGTTTTATCAAACTTTT 1554216 28 100.0 32 ............................ GTTAGCTTTGTGCGTGTGACCGTTATAAGTAA 1554276 28 100.0 32 ............................ ACACTTTGCACAAATAAAGTCACTTTTAATAC 1554336 28 100.0 32 ............................ TTGAAGATATCGCAAAGATTTAACATAGTTAG 1554396 28 100.0 32 ............................ GCTGAAGATAACGCACTTACGCAGGATTGGTC 1554456 28 100.0 32 ............................ TACCGTTTCAGAACTAGCGCCCAGGGTTGATG 1554516 28 100.0 32 ............................ AAGATAAACAGCGGCGTGATTGGCTCGTGAAC 1554576 28 100.0 34 ............................ CAGCATTATGCTGTAACCTAGTGCTTTGCTTGTT 1554638 28 100.0 32 ............................ TTTAGCTTTCCATCCTAACTTCTTGTGTGCGT 1554698 28 100.0 32 ............................ CGTCGGTACAATTCCAAGATAAAGACCAATCC 1554758 28 100.0 32 ............................ AGAAACACTCGAAACCTATTTCTTTCAAATGA 1554818 28 96.4 32 ..........G................. TCGATGAGGGCGACGATGATTTTGATAAATCC 1554878 28 96.4 32 .............T.............. AAGTGCCTGCAATAAGGTGGTATCAAATGGCT 1554938 28 96.4 32 ...............A............ ACTATCCATGTGAATGATTGCTCTTGTTCCGC 1554998 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.2 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GCGGATACACGCACAATTCAGAACGAAACCCGTAAGACTGAGTTGTTACAGACTAACTGGACTGGTGCAACGACGGATTACTATAAAGAGAAGGCAATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTCAACAGTATGTCGTTATTTGGCGGACGTTAATTGATTTTTACCGCACCCTTTGGCAGTGGCATGTGTACAGGGTGCGGATTTTTCATTCTTCTCGTTATGTTCGTGCTATTTCTTCCTCGTTATTTTCTCGCCCTGTATATTTCTAAGCACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATGGTTTATGGTGTCGATTTGATGATGTATTTGACCTTTATTTTTTGTTCTTTAAAAAATAGCCTAATAAACAACAGGTTATTGAACTATCTAAAATAAAGGGTATTTTCAGCCTTTTGGTGCTAACAGTCTGTTGTGATTTGTTTTATTCCTGATAATTTATA # Right flank : ATCGTTAAGCCACTATTATTTTTCTTAAACTATTAACCACAAGTTTATAGAGGGGAAACTCATCAAGGTAGACATTACAAGGATTGCGAAGTGCCTCGCAAAATGAATCTTCAATTTTTTTAAAGCTTGTAATGTCATTGCTGAGAGACTTAAATGAAATAAATAATTCAAAAAAATTATAGTATTAAGCAAAGGAATATTGACATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGAGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAATACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGCGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGAGGAACACCGCTTTATATGGCAACAGAAATCGAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1563743-1565017 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU659150.1 Providencia alcalifaciens strain 2019-04-29290-1-7 isolate 2019-04-29290-1-7 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 1563743 28 100.0 32 ............................ TTAACAAACGAAGTGCGGTAGGATTAAAAAAT 1563803 28 100.0 32 ............................ CCGATGCGATAGCGTTACTCAGTGATAAGCAG 1563863 28 100.0 32 ............................ CATTTTTTCCTGTTTCATGGGTTTGCATGCCA 1563923 28 100.0 32 ............................ GTCATCTGACAATCCATCGACTAATATATCAA 1563983 28 100.0 32 ............................ ATGACTGCATCGCAATTCGAACTACGGCTTTA 1564043 28 100.0 33 ............................ ACCCGCTGTATTTCTAGAACGTGCAACGTGTTC 1564104 28 100.0 32 ............................ TTCTTATTACGAAACTGGAATTATTCATCGAG 1564164 28 100.0 32 ............................ CGTGAAACAGACCAGACCATCAATGAATCATC 1564224 28 96.4 32 ........T................... TCGATAACGCGGAATGCACCACGCTCGCGTAA 1564284 28 100.0 33 ............................ GCAAATCAGATATCCTGAATCTGCTGATGAAGC 1564345 28 100.0 32 ............................ TCGCATGGCCAGAGTGACTTCGCCAACCGACA 1564405 28 96.4 32 ......C..................... TTAAAGTTTTTGAAGCGAGTTAATAATTCATT 1564465 28 100.0 32 ............................ TAAAGGTCATTGAACCTGTTGCTTGAACGTAG 1564525 28 100.0 32 ............................ CGATTCTGCCGCGCTCGACTAATGCAACGTGG 1564585 28 100.0 32 ............................ TCCTCTATTCATTTGATGGACGAGCTGAAGCT 1564645 28 100.0 32 ............................ AAGAGTTTAAACACGGACATTACATGCCGACC 1564705 28 100.0 32 ............................ CGTCAGTCATTTCAATTCAATCGCTTCAATCA 1564765 28 96.4 195 ..........A................. TTTGTGGTTCAACGCTTCATCTTACTAACCTAGTTCACTGCCTCGCAGGTAGCTAAAATATCGGTCTCATCTATTAACTTTTATTATTTATGCTATTGGGTGATTTGTACTAAATTTGGCGGCTGTTATTCTACAAAATAACAGAATAGTGACTGTTGTAAGATAGCTTAGAAATGAACGATAGAGCGGGTCTAG 1564988 27 89.3 0 A..-......A................. | T,CC [1565008,1565012] ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 19 28 98.9 41 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGAAATCGATTCAAGCGGTTCCCTCTAATGCTCGACCAGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCAGAAGAAAGCGGCACTTTGGGCTAAAAAATCAGGTCGAACACTGGGTGAATGCTTAGCGGATTTAGAGAAATCTCGCCCAACTAAGCGTAGTTTACTGCCTTTTATTTGGGTAGAAAGCTTGCATGGTAAGAGTGAGAAAAAGGGAAGTCGTCCATTCCCACTTTTTATTCAGTGTGTTGAAGCGGAACACGTCATTGAGGGGCGTTTTAATTGTTATGGGCTTAGCCAAGTCGTTGAACGTAATAAAATACTGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCGGTGAAATAAAGGGTATTTTATTAAGAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : ACCTGAACAATAGAATGGGTATAATACTGTGTTACCTGACGACAAACATCATAGACCAACAGATTAATTGGAGCGCACCATGCAGTACGAAATTATGATTAAGATCCTGTGTATGACCTTAATCTTCAAAGTGACAAAATTATCGGGCTCACTCAAACCCACAAGTTAAATATCAGGGATAACTGCTCAAACGCTTGATGGATCAGGCGTTCGGTATAGCGTGGAAGGATGGAAATAATCAGACCTAACATGCTGATACCAATCGTTAATGTTAGGGGGAAACCGACCACAAACACAGATAGTTGAGGGGTCATTCGGTTAAGAATGCCGAGCGAAAGGTTCAGAATTAAAAACAGTGTGATAAAGGGCAAGGCGAGCATCAACCCATTGATAAAAATCGTATTCGCAAACTGCAAAAAGATCCAAAAACCATCGCGATGGAGTGGCGTAGTTTGAATGGGAAGCAGCTCAAATGAGTTAGTTAGAATATAAATCAGCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //