Array 1 846809-845040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033717.1 Yersinia pseudotuberculosis strain FDAARGOS_579 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 846808 28 100.0 32 ............................ GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 846748 28 100.0 32 ............................ GCAATATCTTTTAGCTCTAATGTAAATTGCTC 846688 28 100.0 32 ............................ TCTTGATTGCCTATCGAGCTATCAAGGTCAAA 846628 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 846568 28 100.0 32 ............................ GTATCAAGGGGCTGATAGACACGACCCTAAAA 846508 28 100.0 33 ............................ CGCCACGGTGAAAGAGGCTTACATCAACGCATT 846447 28 100.0 32 ............................ GCCTCGTCGAGCAGGACATCAACAAACAGCAC 846387 28 100.0 32 ............................ TTACCGCGCCGCCGCAGAATCTCAGCGTAAAT 846327 28 100.0 33 ............................ CTAAACCCAATGTCTGATTATATAATCTAACCC 846266 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 846206 28 100.0 31 ............................ TTTACGAGGACTATTTCTGTATGTATATTGA 846147 28 100.0 32 ............................ ATCGAACAAACCAGCTCTGCCGATCATGAAGA 846087 28 100.0 32 ............................ AGATTATTTAATGAGTGTCGGAAATATGAATC 846027 28 100.0 32 ............................ GACAAGCTAGATAAACAACCAAATGAAATATC 845967 28 96.4 32 .................C.......... AATTCAGCCGACCGAGCAAGAACCAAACCAGT 845907 28 96.4 32 .................C.......... TTCTGCAACAGTTCCAGTAGTCGGCGTAACGG 845847 28 96.4 32 .................C.......... ATGCTTGCTCCGCCTTCGCTGCGTCCATGACA 845787 28 96.4 32 .................C.......... AGAATCCGCCGTACACATCACGCTTACTTAAT 845727 28 96.4 32 .................C.......... ACCATATTCATCCAGCGGGACCGCTGATGTTT 845667 28 96.4 32 .................C.......... AGAAATGAATCTGGAATTTATCAAATAGATGG 845607 28 96.4 32 .................C.......... AAAAAAGTTGTCGATATTAATGGAAAAACAAC 845547 28 96.4 32 .................C.......... AATCGTATACATATCAAACTTATTAACTCCAA 845487 28 96.4 32 .................C.......... GCACTGCCGGTATTCGAATCAAGGGAGAGGGT 845427 28 96.4 32 .................C.......... AAGGGATTATTACCAGATACAGGTGAAACCAT 845367 28 92.9 32 A................C.......... ATTTAACATCATATAAATCAATCACAGATAAC 845307 28 96.4 32 .................C.......... CTGCAAGTTCCTTAACACTAATCGAATTGAAT 845247 28 96.4 32 .................C.......... ATTAAAGGTGAGACTGACGGAAAATTAAAAAC 845187 28 96.4 32 .................C.......... AACTTGAAACCTTCCCAGCAGTGACACTGGAT 845127 28 92.9 32 A................C.......... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 845067 27 85.7 0 .................C...CC.-... | T [845042] ========== ====== ====== ====== ============================ ================================= ================== 30 28 97.5 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGATTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4528664-4531395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033717.1 Yersinia pseudotuberculosis strain FDAARGOS_579 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4528664 28 100.0 32 ............................ AATTATTACTGTTGATAAACTTATCGATACTG 4528724 28 100.0 32 ............................ TACTCTGAAACTACGGAGTGCGATTATATTTC 4528784 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 4528844 28 100.0 32 ............................ ACTTACATCAAAAACATTTCTAGATGCCCATG 4528904 28 100.0 33 ............................ CGGTTGGGCCATCTCGTGCACTGACCTGATAGC 4528965 28 100.0 32 ............................ TGCTGCAAACTTAGCTACTTCAGGCAAACATA 4529025 28 100.0 32 ............................ ATCCGCATGCATTCGTTGAAGCCACTCAATGC 4529085 28 100.0 32 ............................ AAGTAACGAATAGGCGCTATTCCAGCTCCCGC 4529145 28 100.0 32 ............................ TTGATATGGTCATGCGGGGTTATCACATTGGC 4529205 28 100.0 32 ............................ ATTACCGGCAGTCAATCTGCTGAGGAATAGTT 4529265 28 100.0 32 ............................ TAAAAATACTGTAGTAAACAATACTTTTAGTG 4529325 28 100.0 33 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGTA 4529386 28 100.0 32 ............................ GCCCCAAGTACCACCAATAGACTCCCAATACT 4529446 28 100.0 33 ............................ CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT 4529507 28 100.0 32 ............................ CTATCAGCTTCGAATACAGAGCGCAGATAGAA 4529567 28 100.0 32 ............................ ACTCAGAAATATTTTTATTTGGCCCTATTTTT 4529627 28 100.0 32 ............................ AGAGAGTCCGCTACGGCTGGCAATGATTGTAT 4529687 28 100.0 32 ............................ TGATAATAAAACAGGTTTTTTGAGTCCATTTG 4529747 28 100.0 32 ............................ ACACGATTCAACTACAAAAATGACTCGTTTTA 4529807 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTACTAATA 4529867 28 100.0 32 ............................ TATCTCGGCTGTGAAGAGGTCGAATACACCGA 4529927 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 4529987 28 100.0 32 ............................ CCCTCTATGTTTGACTCACTACACTCTGAGGG 4530047 28 96.4 32 .C.......................... GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 4530107 28 100.0 33 ............................ TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT 4530168 28 100.0 32 ............................ ATGAAACATGCAATCAGCACGGCAATAGATTT 4530228 28 100.0 32 ............................ ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG 4530288 28 100.0 32 ............................ TTCACACACTGCAAATGGACCTTATTTCTAAT 4530348 28 100.0 32 ............................ ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC 4530408 28 100.0 32 ............................ GTTTTAATGTGAGAAATAGAGCGCATCCACGC 4530468 28 100.0 32 ............................ AATCTGGATAGCGCATATTTATCCTGTTTATT 4530528 28 100.0 32 ............................ ATGGTGTCATCATCAATAATAAAACCAAATGA 4530588 28 100.0 32 ............................ TTTATTAATTGAGTTTGCGCGTATACCCATTT 4530648 28 100.0 32 ............................ CATTAATAGAGGTATAAAAGGGATCATATTAT 4530708 28 100.0 32 ............................ ATAGACTCCCAATACTCACCCAACAATTTAAA 4530768 28 100.0 32 ............................ ATTATAATAATCGTGATTGTCTTTAAACGCTA 4530828 28 100.0 32 ............................ AGTGTTCTGTATTAATTTGCCTTCACATCTAA 4530888 28 100.0 32 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGT 4530948 28 100.0 32 ............................ AATTGAAATAATGGTTACTGGCAACGGGCAAG 4531008 28 100.0 32 ............................ ATTAAAGAATAAATTGTATTCTAAATAGTTGT 4531068 28 100.0 32 ............................ TACAGGAGGTGATCTAAATCTCAATCCGGTAG 4531128 28 100.0 32 ............................ ACGTAAACGAGAATATAGACACCTTCCTGATC 4531188 28 100.0 32 ............................ GCTAATCATGCTGCTAATGGTGCCGCGCGAGA 4531248 28 100.0 32 ............................ ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC 4531308 28 100.0 32 ............................ ATCCGGCAGCGCATCAAACTCAAGAACATCGC 4531368 27 85.7 0 ...................-A.A.C... | T [4531392] ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGTTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGGCTATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGAATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //