Array 1 107073-106268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZU010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA18 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107072 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107011 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106950 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106889 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106828 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106766 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106663 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106602 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106541 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106480 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106419 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106358 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106297 29 96.6 0 A............................ | A [106270] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125369-123205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZU010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA18 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125368 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125307 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125246 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125185 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125124 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125063 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125002 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 124941 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124880 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 124819 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124758 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124697 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124636 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124575 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124514 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124453 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124392 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124331 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124270 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124209 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124148 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124087 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124026 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123965 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123904 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123843 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123782 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123720 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123659 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123598 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123537 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123476 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123415 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123354 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123293 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123232 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //