Array 1 36270-40683 **** Predicted by CRISPRDetect 2.4 *** >NZ_UPHL01000057.1 Mycobacterium persicum strain MK42 isolate MK42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 36270 38 100.0 34 ...................................... TGATTGAGCGCTGCGGTGCAGCAGAACTCAAGTC 36342 38 97.4 35 T..................................... GTCCTGGGTGAACGGCGCCCCCGGCTGACCGGCAA 36415 38 100.0 37 ...................................... CCGCACAACCCCGAAGCGGTGGGACATACCGGAGATG 36490 38 100.0 32 ...................................... CAGACGTCGCCGGTAGCGACGACCTGCCGGGC 36560 38 100.0 36 ...................................... GAGGGAAGTAAGGCGGGGTCGGCGGGGGCTGTTATT 36634 38 100.0 36 ...................................... TGTAAGGACATCAGGGTTTAGCGGCCGAACAGTCGC 36708 38 100.0 35 ...................................... ATGTGCCTCAGCGGTTTTCGTGACCACGTCCTGCA 36781 38 97.4 36 C..................................... CGTTCGTTGCCCGACTCATGCCGACAGAACTCCCCC 36855 38 100.0 35 ...................................... ATCGTGGAGTTGTTTGGCTTGGTCGAGGCGCGAGT 36928 38 100.0 36 ...................................... CTCCGCAGACAAGCCCAACCGGGTCAGGTGGTGCAC 37002 38 97.4 36 C..................................... CTTGAGCTGATTACTATGTATGGGTTGACGGTCACG 37076 38 100.0 36 ...................................... AAAGACAAGTACTCCGGCCCTGAGAACGCCTACAAG 37150 38 92.1 32 A...................................CA GCGATGATCGTTGTCACGTATCTCGTGCCAGC 37220 38 97.4 35 A..................................... CCATCCGTCGGGGTGGGGCGGGTAGTGGTCACAGT 37293 38 97.4 36 C..................................... CCCAATGGACGACGAGCTGATCGGCGCCACCGTGCG 37367 38 100.0 36 ...................................... CCATGTTGCCCACTCCTCATCTGTGAGTGGCGTTGT 37441 38 100.0 36 ...................................... TGGTGGAGCTATACAGGTCGGCGTCGAAGTGCACCA 37515 38 100.0 37 ...................................... ACGGCAAGGATGATGCGTTGTTGGCTGTGTTCGCTCA 37590 38 100.0 36 ...................................... TCCCGCACCACGTCGGTGACGACGGTGATCATGCCG 37664 38 97.4 34 A..................................... TGACCACGGGAAACATCACACTTCCCATGCCCGA 37736 38 97.4 36 A..................................... GTTGCAGGCGGTGGTGGGTTGCACACCGGGGGCCGG 37810 38 100.0 33 ...................................... ATCTTGGTTTGCTTCCGCTGGGGGCTTTTGGCA 37881 38 97.4 36 A..................................... AATACTGCGCCGCCGCGGTACACCACGACCACCACG 37955 38 97.4 33 A..................................... ATCTTGGTTTGCTTCCGCTGGGGGCTTTTGGCA 38026 38 97.4 36 A..................................... AATACTGCGCCGCCGCGGTACACCACGACCACCACG 38100 38 97.4 33 A..................................... ATCTTGGTTTGCTTCCGCTGGGGGCTTTTGGCA 38171 38 97.4 36 A..................................... AATACTGCGCCGCCGCGGTACACCACGACCACCACG 38245 38 97.4 35 A..................................... CCACAATGACCGGGGGGACTCCGGCGGCCATCGCG 38318 38 97.4 35 A..................................... ATTTTGAACGTTGTCGAGCCCGCGTTGAGTCCAGT 38391 38 100.0 34 ...................................... GCCTGGCAAAACCGCCTCGATGATCTGATCGACC 38463 38 100.0 37 ...................................... GGCTCGGCTGTCCATTACGGCCAAGGTGCCCGACCCT 38538 38 97.4 35 A..................................... AAGTTGCGCGCATCTGATCCAATGTGGTACGAGGA 38611 38 97.4 35 C..................................... CCTACACCGATTTCCAGGCGCGATGGCAGTCAGGA 38684 38 97.4 34 T..................................... TTCGGAAGTTGATGAGGTCACTACCCTAACAAAG 38756 38 97.4 23 C..................................... CACGGCGGAGCCCACGGCGGAGT Deletion [38817] 38817 38 97.4 37 T..................................... GCTCCGGTGGACAGACGTCAGAGATGGGGCCGCGCCC 38892 38 100.0 36 ...................................... CGGCCCCGCGGATTCGCACCCCACTCGGGTGGCGGT 38966 38 100.0 34 ...................................... CAGCCCGGAGCTATAAGGCTTATACGATAACGTC 39038 38 100.0 35 ...................................... AGCGGTGAGACACGCGACGGCTGGAATGTAGCCGA 39111 38 100.0 35 ...................................... TTTGGCCCTGCACATCACCCGGACCATGGACCAGG 39184 38 97.4 37 A..................................... AGGTTGAGCCATGTAGCAGTCCCGCTCCACCACCGCC 39259 38 100.0 34 ...................................... CGCAGGAGTGGAAGGACGGGCGGCGTTGGTTGGC 39331 38 100.0 35 ...................................... TAGGGTCCGCGGCGCTGATCAACTGCGCCCAGATC 39404 38 97.4 34 T..................................... CGCAGGAGTGGAAGGACGGGCGGCGTTGGTTGGC 39476 38 100.0 35 ...................................... TAGGGTCCGCGGCGCTGATCAACTGCGCCCAGATC 39549 38 97.4 34 T..................................... GTACGCGCGCGCGGTCCCAGATGTCGCTGTCTAA 39621 38 97.4 35 T..................................... CGCAAGCACCGCCTAGTCGCCACTACGATGCCCGT 39694 38 97.4 35 .....T................................ AACAACTCTGGGACGTACAGCGTGCCAGGATGGAT 39767 38 97.4 36 .T.................................... CTTGCTATCGCGCCGGGCTCCTATGAGCTGCGCCGA 39841 38 97.4 35 C..................................... TGTCAGGGTGCCACTTATGGCGAACCCCGTCTCGT 39914 38 100.0 36 ...................................... AACGGAATAACGTCACGAATCACATCGTCGATCTGC 39988 38 100.0 35 ...................................... CTAGCTTTGGAGCCGCAGCGGCGCCGCGCGGTGCT 40061 38 94.7 35 C.......................T............. AGCAACGACTCGTCGACCAATGGGACGCCCCGTCG 40134 38 97.4 37 C..................................... TCCGCCGGTAGGTCCTCTATAAGCTCACCACCCAAGC 40209 38 100.0 33 ...................................... CTGAACCATTACAACTACGAGCGCCCGCATGCG 40280 38 100.0 33 ...................................... ACCGACGCGAGTAGCCGACCCGTCGAGTTGCCT 40351 38 100.0 37 ...................................... TGCCGGTGCTTGCCGACCCACGCAAGATCCTCGTCGC 40426 38 100.0 35 ...................................... CTTTCAGGCGGCGATGCGGAGTAGGTCGATGATGG 40499 38 97.4 35 A..................................... TTTTGACCCGAGTGTCCAGCGATACCGCACACGGC 40572 38 100.0 36 ...................................... ATCCGCGAAGCCGACCTGGCCACCACACCGACCCAC 40646 38 86.8 0 C.....A..........T......T............T | ========== ====== ====== ====== ====================================== ===================================== ================== 61 38 98.4 35 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : ACTTCAGGCGCTTCTTCTGGCACGGCACCTTCGCGGCGATCTGACGCATTATTTCCCATATAGAACGACAGGGCGGTGAGATGGAGATACTAGTGGCCTATGACATCAGCACGGCGTCACCTGACGGGGAGCGTCGTCTTCGCGGGATAGCGAAGGTTTGCGAGGGGTACGGTCAGCGTGTCCAAAAGTCAGTTTTCGAATGTCAGCTGGAAATGCGCGAAGTCCGCCTGCTGATAAATGACGTTGAGAAGGTTATCGACCCGAAATCCGATCGGGTAGCCGTCTATAGACTGCGTGAGCCGTACCGTCGCTACGTGGTGACCCTTGGCCGTGGGCCAGAGGTCGACTGGCGGCACCCAGTCATTTTGTGAAGGGGCGGACCCGGGTTAGACGTGCGACCCGTAGTAGATCCGCCCGAGGATTCGGGCTCCCAAAGCGCAGAACGGTTTGTTGATAAGTTGATGATTGTCGCGGTCGCCGAAAAATAGCTGTTCGCGAAG # Right flank : TCGACCCCACGGCTCACACCATCGACAAGGTTGTCAAGCGTTGGATGACTTTCTGCGGCGCCGATGATTCGAAAGATCAGGCTCGACAAATGACCCTAGTGGTGTGTCACGCAAATAGTTAACTGAATGTTCGGTATTCTGGATCGGTGAGCGCCTCACCTGCAGTTGCTTTGGCCATGTCGGTTGGCGAGCGTGAAACGTTGGAGAGGTTGGCGCGGTCTGATTCGGTGCCGCATCGGCAGGTGATGCGCGCGCGTGCGTTGCTGATGGCTGCTGACGGCGTGGCGAACACCCGCATCGCTGAGGAGGTGGGGGTGACACCGGTGACGGTGCGTAGCTGGCGCAAAAGGTTCAGCGAGGACGGGCTGGCCAAGCTGGGACAGGTACGTAGGGGACGCGGCCGCAAAGCCACGATCTCAGACGCGCAGGTCGCTGAGATCGCGCGATTGACCACCGAGGAGACCCCGCCCGGCCACACGCATTGGTCATGCCGCACGATG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //