Array 1 39696-34141 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUL01000132.1 Methylomonas koyamae strain R-49807 contig_86_(1..57715), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 39695 28 100.0 32 ............................ TTTTTTAGCAATAACGGTCATAGTCATACAGT 39635 28 100.0 32 ............................ TTAATCCAAGGCTCTGGTAACGTCAACCTGCC 39575 28 100.0 32 ............................ TGATAGAACGCTTTGTTTTGCTGCCATGTCTG 39515 28 100.0 32 ............................ GTAATTAGGGTTAACGGTTCGGCTGGCGCTAC 39455 28 100.0 32 ............................ AGCAACCCTTACGAGCACAGGCAATTGCTCGG 39395 28 100.0 32 ............................ ACAAAATCGGCGTAACCATGGCGTCTTGGTTG 39335 28 100.0 32 ............................ TCAATAGTGACGCACATATCCGCATCAGGAGA 39275 28 100.0 32 ............................ AAAATAACCAGCTTGCCTGATGGCCTTAGTGT 39215 28 100.0 32 ............................ TGATAGCTGCTTGCCGGGGGCTGATTTCCGCC 39155 28 100.0 32 ............................ TTTCCCGCAGTCTGCCAGCGATATCTATTCGA 39095 28 100.0 32 ............................ TACCAGCCGCGCCGCTCCTTTTTTAGCGCGTC 39035 28 100.0 32 ............................ TTCCCAGTCCCATTTTTCGATTTGTTCAACGT 38975 28 100.0 32 ............................ AAGCGCCACCGTTGCTTATTATTCTTGCGGTA 38915 28 100.0 32 ............................ ATTAGGGAGTGCCAGAAGTTCAGCGGTTACAC 38855 28 100.0 32 ............................ TTTCGGTGTTTTTTGAAATCCTTGGCCAGTTG 38795 28 100.0 32 ............................ TTTAACCTGGTCCATGGCTATTTGGTGCTCGA 38735 28 100.0 32 ............................ TAATGCCTCAGCAATAGCCGCCCTTGCTTCAT 38675 28 100.0 32 ............................ ATCATGCCATACCGCTCATAGCGCACCTGTAA 38615 28 100.0 32 ............................ GTTAAAGCCCCGTTGCCGGGGCTGGTGGTTGT 38555 28 100.0 32 ............................ TATCACAGTATTTTTTTAAAACAAGAGCGGCT 38495 28 100.0 32 ............................ GCCTTGAGCCGGTTTTTTTGTGCCCGGTAAAA 38435 28 100.0 32 ............................ ACATTACCGAAAAAGACTACATTGACGGCGGC 38375 28 100.0 32 ............................ TGCAATAACGACCGTATATATTCAATTGGGTC 38315 28 100.0 32 ............................ GACGAATAGCCGCCGTTGATGTCCTCTTCAAT 38255 28 100.0 32 ............................ TTTGCCGTCTTGCGTGCTGAATGTGCTTACTT 38195 28 100.0 32 ............................ TCATAGATCAAGTCGAAAAGGTCTTGGCTGAC 38135 28 100.0 32 ............................ TAGTATTAAGCCAATCCCCGAAACCATCACCA 38075 28 100.0 32 ............................ TGATAGCCGACTGCGACACAGTTTCTATCCAA 38015 28 100.0 32 ............................ TCAAAATATCCGCCAACTCCAAGCGATTCTAT 37955 28 100.0 32 ............................ GCACGTGTGGGGGCGTGTGGCAACTGGCGCAT 37895 28 100.0 32 ............................ TAAATGGAGTGGGGCATATACACACATCATAT 37835 28 100.0 32 ............................ TCTCTAATTGTTAATGCGTAATCTTTCCAATT 37775 28 100.0 32 ............................ AAAACCGCGCAGAGTGGCGCAGGCTAGGCATT 37715 28 100.0 32 ............................ TTTCCGCCAAGCGGCGTACTCCTCCATAGACA 37655 28 100.0 32 ............................ ATTACCATTCCGACCGGCTTGCAGTTGACTGA 37595 28 100.0 32 ............................ ATTTCATTGCCAAACCACAACAAAAACAGAAT 37535 28 100.0 32 ............................ TGCATAAGCGCTGGTCGGGGGCGAGTTCGGAT 37475 28 100.0 32 ............................ TTAAACGGTACGCTTGACCCGTCGCAGTATTT 37415 28 100.0 32 ............................ GTAAATGGATGCATTGGAACTTGTGGTATCCA 37355 28 100.0 33 ............................ TTGTTGCAGTAAGAAATCCAAATCTATCCCCTT 37294 28 100.0 32 ............................ TTCAATTACTTCTGTCATGCTTGTGCGCCTCC 37234 28 100.0 32 ............................ TATTTGCATTTGATTAATCGGCCGGCTGCCTT 37174 28 100.0 32 ............................ TATAGCGGCTTGCTGCGCCCTGGTGTTGAAAT 37114 28 100.0 33 ............................ GAGTACAACAAACAAGACGTGGTTTTGTGTCGT 37053 28 100.0 32 ............................ TTTTGATCCGTCTTCATTGGTCGTTCTGACAA 36993 28 100.0 32 ............................ AAAACCCGACACCCGTCGCCGCTGGCCCGACC 36933 28 100.0 32 ............................ GTATAAAACTTGCCGTCGGGCTTTGGGTTAGT 36873 28 100.0 32 ............................ ACACTGTAAGACCGTTCTCGGCTGCGGGATTG 36813 28 100.0 32 ............................ TCTTCAATCGAGAGGTTATTAAGCCTTGCAAA 36753 28 100.0 32 ............................ AATACCATCCGCCGTAGTAATCGTCCGGCTTC 36693 28 100.0 32 ............................ CTATAAACTATTTCCCACGGCCCCGGCGTACC 36633 28 100.0 32 ............................ CATAAGCATCGCGTCGCCACGGCCCTGGAGTG 36573 28 100.0 32 ............................ AGCGGAGTCCGAAGCCGCTACAATCAGACCAA 36513 28 100.0 32 ............................ AAGTGAGTTGGTAGTAAACCCGGCGCCGGCAA 36453 28 100.0 32 ............................ ATTCGTTAGCAAGCTGCTCGTCGATATCGAGC 36393 28 100.0 33 ............................ GCTATCCTATTTGGCGCCTTTGATGGACATCAT 36332 28 100.0 32 ............................ TGAATCATCAAAACAGGGCGTTTACTTTTGGC 36272 28 100.0 34 ............................ CCAAACACGATTTCCGCGTATTTCGAACGTTTCA 36210 28 100.0 32 ............................ AGAAAAGCTACTTGGCTTTATGCCTGCAAAAC 36150 28 100.0 32 ............................ CTTCGTCAATAACGATAGTTGCGCCAGCTGGA 36090 28 100.0 32 ............................ ACCTGCTCTTTATCCAGCCGGTGTCTAAACGC 36030 28 100.0 32 ............................ TTCGAAAAAATACAACAACCACCACCGACACC 35970 28 100.0 32 ............................ AGAATCACATCGATCATCCGGGAATACATGGT 35910 28 100.0 32 ............................ GTTAACGACAACGTTTCCGGCGGCATAAGCCG 35850 28 100.0 32 ............................ CCAGATCATCTTGGTGGGTGGGAGAAATGCGA 35790 28 100.0 32 ............................ GGTTGAATTCAGGGATGTTTTGATCGGAATTG 35730 28 100.0 32 ............................ TAGACTGGCCGGGTATCTTTATAACTCGGACA 35670 28 100.0 32 ............................ TTTTTAATTGGGTTGATTATGAAAAAATATCT 35610 28 100.0 32 ............................ TCCATGCCGAAAAAAATGGGCAGCCGGTTCTT 35550 28 100.0 32 ............................ AAGGATGGGCGCCGGACTGAACGGGGTTGGCG 35490 28 100.0 32 ............................ GTAACGGCAAAAACAGAAAAGTCGCTTGGCTT 35430 28 100.0 32 ............................ AAAACTACATAAATAGCCGAAAGCACAACACC 35370 28 100.0 32 ............................ GGCCGGGAAATACCGGCGTTGCCGTTGCGCAA 35310 28 100.0 32 ............................ AGGTGGTGACAAACAAGCCTTAACTGCTTCGG 35250 28 100.0 32 ............................ ACGCGGAAGCCGGTGCCGCTTGTTCCTTTGCC 35190 28 100.0 32 ............................ ATGATGGCCACACCGATGCCGGCGGCCACTGC 35130 28 100.0 32 ............................ ACCAAAAAACCATGCAAGAATCCGAGCAACTA 35070 28 100.0 32 ............................ AATCCTGAATCTACTGCCGCTCTGCAAAACTC 35010 28 100.0 32 ............................ GCTGAGTAGTTCCGGCACATATTCCGGATCGA 34950 28 100.0 32 ............................ ATGCACAAATCATGGCGCTTGTTGAGTGCCTA 34890 28 100.0 32 ............................ AGCAGCCGGCATAAGCTGTCCGTACTCTCGCC 34830 28 100.0 32 ............................ ATCATTCCACCGCCGGTAAAGTCGCCAGTAAT 34770 28 100.0 33 ............................ AAATAAAAACCGAGCCGTTTACCCTTGATCCTA 34709 28 100.0 32 ............................ TATCGCATTAGCGAGCAAGGCATTGATGAGCT 34649 28 100.0 32 ............................ ACTATTCAGGAAAACAAGCACTTTGCTTTGTT 34589 28 100.0 32 ............................ TTGTATTTCAGCCCTTTATGGTGCTCTCTGTA 34529 28 100.0 32 ............................ AAAATTATCATCATGTCGGTGTTTCTTGTCGG 34469 28 100.0 32 ............................ AATATCAATCAGTCTTACAACGCCGGGCGTTA 34409 28 100.0 33 ............................ GTAATACCCTCCGCGAAGCTCTTCGCATTATTC 34348 28 100.0 32 ............................ AACTGGAATACCTGATCGCCGCCAAAGACGTG 34288 28 100.0 32 ............................ GACGCCGTGTTTATCGACGCCGGTTACGGTAC 34228 28 100.0 32 ............................ ATCTTGCACGGCCGCCAAATGGCGAAATGCAG 34168 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 93 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : CATTGCACCGGCATTCGGCCGGTGCCGGACAAGCTGTTGGGGTATGCGGTTTACCGGCGGGTACAGCCCAAGACCAATCCCGAACGTTTGGCCCGGCGCTACGCCAAACGCCATGGTGTAGATTTGGCGACCGCGCTGAACATGACGGTGGAACTGCGGGCGGCGAGCGAGAATCCTGCTTACCCGCTGTCATTTCGCTATTGCGACATGCTCAAGCCCTCGGTGCCTTGGCCATTCATTCGCTTGCAAAGCTTGAGCGGCGGCCAGACCTTTTGTTTGTGGATAGCCAAAACTGCCGCCGCCGCGCCGGTTGCCGGCAGTTTCAGCGCCTACGGCCTGAGCAGCGTTGCCACCGTACCCGAGTTTTGACCCAAATTTTTTCGCTCTTTAACAATATGAACTAAATCAGTCGGTTACGGCCGGGGCTTTTGCGGATGGTGAAAATGGGTTTATCCAGTCCCAGCCCTTGTCGCAGCCGGCTTCCCGTTTATTTATAATCA # Right flank : ATGAAAAAGCCGGCGATGGTTTGATGGATATGGAGTGGCGCCAGTTGCCGTCGATTATGGGCGATGCCGAGCAGGTTCTATTCGACACGCAAACCGGCAAGCTGCTGTATATCCTGAAATCTCAGGACGCTGGCATCAAGTTGGCGGTGGAGTTTGACTTCATCAAGAAAGACAATCCTGCGGTTAACATGATCGTTTCCGGCTTTAGGCAGGCGACTAAAACGATTGAAGAAAAGATTCGCGGGGGGATTTATGAGGTGGTGGAATGAGAGCGGGAGGCCGGCCGTCCCTCCATTCGTCGGCCCTAGCGGGCCACGACACGTGGAAGCCGATTTTCCACGCCTCGCTCTCATGTGGCTAACATCATAGGCCGAGTTATGACCTACAACAATAAAGCGGTGACAAATAATGGCGACGATTCAGTTTGACGGCGAACGGGTGCTGGTTGCATCGCGACGGCTGGAGAAGGTGCGTGCGGAGCAATCGCCGGCGTTGATCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8391-11838 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUL01000102.1 Methylomonas koyamae strain R-49807 contig_5_(1..57137), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8391 29 100.0 32 ............................. CTTTTGGCGAGACATTAGATAGCCTCCCGCAA 8452 29 100.0 32 ............................. AAAACCGAACGATTGCGAGATTTGCGGCACTC 8513 29 100.0 32 ............................. TAAAATTATCTGTTGGTGATGTTCTTATCGTG 8574 29 100.0 32 ............................. GAGGATACCGGCAAAACCCCGATGCGTGCGTT 8635 29 100.0 32 ............................. TATGCCCGCCGCGCGGAAGCGATGAGCGACGA 8696 29 100.0 32 ............................. CCGCTAAACGCGGAACGACTAGCTACAAATTA 8757 29 100.0 33 ............................. GTTTTCTTCATATGCTTGAGATCGCCTTTCAAA 8819 29 100.0 32 ............................. GCGACGACAAATGTACTTTGGGCGTGCTTGTC 8880 29 100.0 32 ............................. GCCTGCAACTGGCGAATGGCTTTCACGAGAAA 8941 29 100.0 32 ............................. CACGCCGTTGTAAATCTGGCGGATGGTATCGA 9002 29 100.0 32 ............................. GCCTGGACGAAACCCTGGCCAGCCTGCAAACC 9063 29 100.0 32 ............................. CATACAAAAATCCTGAAAGCGCGGCCAATCGG 9124 29 100.0 32 ............................. GGTAGCCCGAGGTATCTGAGCAGACCAGTTAT 9185 29 100.0 32 ............................. TAGGCAATGAATAACAAGCACTAGCGTAGCCC 9246 29 100.0 32 ............................. ACGCTCAACAAAGGCTGAAGAGCCACCGGACA 9307 29 100.0 32 ............................. TGAATATTTCGGCGCTGCGCCAACTCTTGATG 9368 29 100.0 32 ............................. GCCACGATTGGCTCAATCTTTATTGCTGCGCT 9429 29 100.0 32 ............................. GTATCAATGTATTTTGTGAAGACGATAACGAC 9490 29 100.0 32 ............................. CCGTCGGTGCCGACGGTGGTTTTGCCGTGCCG 9551 29 100.0 32 ............................. CGGAGCGGGTCGCCGACGGCTAGCGTGCGCCA 9612 29 100.0 32 ............................. CCGCCGTTGACGTCAAGCTCGTTATCACTGAG 9673 29 100.0 32 ............................. GCTATCGCCGCTTTCGCGTCGCCTTCGTCGAA 9734 29 100.0 32 ............................. TCGAAGCCGCGCTGAAAAACGTCGCCATCGGC 9795 29 100.0 33 ............................. GGAATCTTCATTCAGAGACAGGCGCCAGATCTC 9857 29 100.0 32 ............................. CCGCGGCAGATCCTAATGTTGCGCAAATCCTG 9918 29 100.0 32 ............................. TTGATTTTGTTGTCGTTGGCGGACCGGGCCGG 9979 29 100.0 32 ............................. AAGCCCGGGCGCTGATTGCCGAAGAAGGGGCA 10040 29 100.0 32 ............................. TCTTATCAACCCAAGCGTTCCTGTTGGTTCAT 10101 29 100.0 33 ............................. CCATGGCCTGCCAGATCAGCGGTATGCGCAATC 10163 29 100.0 32 ............................. TTTGCGTCGATCGATCCGGGCGGCGATTACGC 10224 29 100.0 32 ............................. GACTTCGAAAAATCCGGCGGCGGCAATCTGAA 10285 29 100.0 32 ............................. TGGTTTCTTGGGCGCAGGTCGGGCAATCGAAG 10346 29 100.0 32 ............................. CAACTGAGGGATCGACTGGGGAGATTGCGGCG 10407 29 100.0 32 ............................. GCGACCTGAGTCGGCGAGAGTTTTAACGACAT 10468 29 100.0 32 ............................. CCACGCTTGCGTTTGAGGCGTTACGCGCGGCA 10529 29 100.0 32 ............................. ACTTCAAACTTCGTTCGGCTATCAGGGGCTGG 10590 29 100.0 32 ............................. TGCTTCCGGTTCTTGTATGAGAGTAGGCCGCG 10651 29 100.0 32 ............................. CGTTTATAAAACAAATTCTCGTGATTATTAAT 10712 29 100.0 32 ............................. ACGACGAAGGCGGTCCGGAAATCTACGCTGCT 10773 29 100.0 32 ............................. CGGAGATGATGAAACTGGTGGTCAACCGCCCC 10834 29 96.6 32 ............................T TCATCGACGACAGCCAGAGCGTGTTCAGTTTG 10895 29 100.0 32 ............................. TCGCGGAGCTGGCAGCGCGTTTGAACATGCGC 10956 29 100.0 32 ............................. TAGCGCTGGTAACCGTACCTTGGTATGACGAA 11017 29 100.0 32 ............................. GGAACGCCCGTGAGCTTTACGCGAAGGTGTAT 11078 29 100.0 32 ............................. ACGTCGCCCGTTATCGGTCTCTAATATCGTAA 11139 29 100.0 32 ............................. GCTGGATCGTGATGGTTGCCGTTCTGACCGGT 11200 29 100.0 32 ............................. TCGAAATCTTGATAGCAGGACAGCCAATCGAA 11261 29 100.0 32 ............................. CGTGCCAGATCGCGCACGACGCGCGGAAACCG 11322 29 100.0 32 ............................. TCGCCGGACAACAATTTATGTTGAAAGAGTGA 11383 29 100.0 32 ............................. GCCGACAACAGTACCACGCATCAGTATTTTAC 11444 29 100.0 32 ............................. GTCCATAAATAGAGATCGAGCATAACCCACCC 11505 29 100.0 32 ............................. GAATTGACGCCACATGGAGAGTTCGAGCAGCG 11566 29 100.0 32 ............................. CCCTAGAATCCGGCGAAACTGTCCGCGGCGTC 11627 29 100.0 32 ............................. GGTTACCACGTGGAAAACCCGGCCGAGAATCC 11688 29 96.6 32 ............................C CGTTTGCACCATCTGTAACAGGGTTAGCGCCA 11749 29 100.0 32 ............................. AAGAGTTTCTGGCCACGCAGGAAAAACACGCC 11810 29 79.3 0 ...........G............CTTAT | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.5 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : AAGGTGCGCGAGATGATTTGGTCGCAAGTCGAGCAGGGCCTAGAGGAGGGCAACGCCGTGATGGTATGGAGTACCAACACCGAATCCGGCTTCGATTTCATGACCCTGGGAAAAAACCGCCGACTGCCGGTCGAGCTGGACGGCTTGAAACTGGTGTCGTTTTTTCCACCGGAAGATGCCGATTCGACGCCCTCGCCCTCAGGGAGCGGGCCGGGGTGAGGGGAGAAATGCGCACTATTAACCCCGACCCTTAACTATACCGTTCGCCTTTATGCCCCTCGGGTACTGAGCCCGTCGAAGGGCACAGCAGCTTGGGCTTCGACCCGCTCAGCCCGAACGGAATACATGTGATAAACGGGGTCGGGTGAATAGATGCCTGGTTAGATATAGAGCGCTGTAAGATGTTGCGCCCGCTTTTTAACAACTTGGAAAACACCGAAAAATTCGGTAGAAAATTCGACCGGTTGTTTCCGTTTATCTAACAATAAGTTAGCATTAGT # Right flank : TAAAATCTCCCCCAGCCCCTCTTTTTCAAATAGGGGAGCTTGGCAATGTTGGCTTATCGGAATTGGCCCGTGTTGCAGGGACGAACGGTGTTCGCCGATGCCGGTCGGCGATTGCCGGCGCGTTTTTGGCTTCGGCACGGTCCGGTGGCGGGCAGCCGTTGGCTAGGTTCGAGATTGACCGGGGCGAGCAGGGGCACTTACTATCTGCACTCCCGCCACACCGCCGGACGTAGCTATGGGCCAAGAAATCCGCGCCGCCACGTATCAAGAAGCCGATTTTCAGCGGTTTTGCCAGCGTTTGCAGGCGGAAACCGAGTTGCTGGGGAGATTGGTCGCCGCTAAAGCCTGTTCCGAAGCCGAGCCGGTGGCAGGCTTCGAAATCGAAGCCTGGCTGCTGGACGCGCAAATGCGGCCGGCGCCGGCTAACCAGGCATTTTTGCAATCTTTCGGCCAGCCGCTGGCCGGCCCGGAGCTGGCGAAATTCAATATCGAACTGAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47544-46134 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUL01000057.1 Methylomonas koyamae strain R-49807 contig_19_(1..47543), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 47543 36 100.0 37 .................................... TTAGCTATGGCCGACATGGAGAAAAAGCGCAATGGAT 47470 36 100.0 35 .................................... GCGACCGCGACGGCGTCGACTACCTGCGATGGGTT 47399 36 100.0 37 .................................... CGCCGAAGAATCTGCCGGCGTTGGGCTTGTCATCTTC 47326 36 100.0 37 .................................... ACGTGCAGCGGCTCGCAGACCGGCGGCGTGAGGTAGG 47253 36 100.0 36 .................................... TGGGCGGAACTGTAAGACGAACCCGCAGGGCAGTTG 47181 36 100.0 35 .................................... ATAAAAAAGGCCCATTTCCTTGAGCGTGTAATAAA 47110 36 100.0 37 .................................... CGAAGAAAGCGGAAACAATCTAATAATCACCGATCAG 47037 36 100.0 37 .................................... TTCGACATATTACCGAAGCGAGACGGCAGGTTATTTG 46964 36 100.0 36 .................................... TATCAGGGCGGCGGTTATGGCTTTGAGCTATGCAAT 46892 36 100.0 36 .................................... GGTACGCGGCGCGGCTGGCGAGGACGCCCCCACTAC 46820 36 100.0 36 .................................... GTCAATGTAGAGGCGCTTGATGGCACCGGGTAAAGG 46748 36 100.0 38 .................................... ATGTTCAACAACGAATGCGAAGGGATGTGCGGGGTATG 46674 36 100.0 38 .................................... ATCTTCGTCGGTTTCTGGTTTGTGGTTTATCCGGCCAA 46600 36 100.0 34 .................................... ACATCAACACCGAGCCACTGAACCGAGAACAAAT 46530 36 100.0 34 .................................... TGAATGAAGAAGCATTAACAGAAATTATTAAATT 46460 36 100.0 35 .................................... TTGTGACTGCAACGATTCTGCAACGCGGCAGCCGT 46389 36 100.0 38 .................................... CTGCAATCCGGTAAACGACGACACGGAAGCAGACCCTT 46315 36 100.0 36 .................................... ATGGTAGCAGAAGAAGAAAAGGCCGCTAAACAATAC 46243 36 100.0 38 .................................... ATAGCTAAAATAGATAAAAAGATAACTGGATTTAAAGT 46169 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 100.0 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : | # Right flank : AGCGCGGGCTGGAGGCCTTGATTGGCGCGGCCTGCGCGGGCCGTTTGCGAGGACTGCGTAAAACGGCCGGTCAACTTTAGCGGAAAAGCCTGCGCCGCGCCAATCCAAATAGCTAAGTTCCTGATTGTTAAAGAGCTGCCGGCTTGCGAGAGCTGCCAGACTTTTGCGCGGCACTGCAGCGCTCGCGTGGTGGCGGCAAGCACCGATTAACGTTCTCAGCCACCAGTTTAAACCGGTCAATTTTCGTTCCATTCTATTGTTGCCCTGCCAAGCTTTTGAAACATACACGGTAAACCGTAATAAAATCAGACCGTGGCGATAGGAGACAGGGCGACTGTACGCCAGACCCAACCAAACCCACGAGCCGGTTTTACAGTTTGAACCGGCCACATTTGAGTGGAGATCGGCCGACATTTTACTGATCTCCTCAACATCAGACGATCACCGGCTGCCGTTCCACCACTTCGAAATCCTTGCCCAAACTGACCACCGAGGGCTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 2708-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUL01000096.1 Methylomonas koyamae strain R-49807 contig_54_(1..2707), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2707 36 100.0 37 .................................... CGGTCTTCTGAGTCTAAGTCTGCTCTTGAATTCGATC 2634 36 100.0 36 .................................... CGGCTGAAAGAGGACGACCCCGAAACGCGATACCTG 2562 36 100.0 35 .................................... GAAGGTTAAGAAAGATATGGCCGATGCCATACCCG 2491 36 100.0 35 .................................... GCCGGTAATATCGATTTTGGCGCCGAAGTCATGCC 2420 36 100.0 37 .................................... CGCGGGATTCAAGCCAGCGCGTAACCAGTAGACCGTC 2347 36 100.0 37 .................................... GGTCGTGTACGGCGACGATGGCCGCGAAACCTACATC 2274 36 100.0 37 .................................... CTCAAACTCGAACGACTACGCAAACCGCTAATGGCGT 2201 36 100.0 37 .................................... GCCACATAATCCGGGTCCAAACCGAATTGGCCGAGAT 2128 36 100.0 37 .................................... TCATCCTCGCAGCGAGCGGCGGCCTGCATGTCTTCAT 2055 36 100.0 35 .................................... GTCTTCCCATGTGTCCATCGGTAGTTCGGTCATGG 1984 36 100.0 36 .................................... GTGAAAATGCAACCAATAACGCAAGCGGCCCCCCGT 1912 36 100.0 35 .................................... GCAGCACTCGCCGCGTTATATGCCAAAACTGCCTT 1841 36 100.0 36 .................................... GGCAGGAAGACGCAGACGCGGCGGGTTGTGAAGCCT 1769 36 100.0 38 .................................... GCGGAATAGGCTGCGTTTTGTGGTCATGCTAACCTCCG 1695 36 100.0 35 .................................... GTGTCATCAGCCGCACCCTGCTGGCCGGCAAAACA 1624 36 100.0 35 .................................... AGCCAGCCGGCGATAACAAGATCGTTACCAAGCTA 1553 36 100.0 35 .................................... GCTTAACCGATGCCATCGAAGACATATTGCAAACC 1482 36 100.0 36 .................................... ACCCACACCGTTGACCTGTTTCCAGCAGCCGAACCC 1410 36 100.0 36 .................................... CGGTAACGGTCGCTTTCATCGTTCTGCGCCTCTTCA 1338 36 100.0 38 .................................... TTAGATGCGTGTAATTTGTTCTCAATACAAGGGTAGCT 1264 36 100.0 35 .................................... CGCTTATTTGCCTAGCCACCGGAGCACGTTGGAGC 1193 36 100.0 36 .................................... GTTGATGATGGGCTCCACCAGGCGGCTCGGTGCGTC 1121 36 100.0 35 .................................... TTCAGACCGATAGCGCTGCTTTGCAGGCCATTGCC 1050 36 100.0 37 .................................... CGAATATAGAAGGTGGCAAGTATATCCAAAGCTTTTG 977 36 100.0 37 .................................... GTATGTGGTTTATCTCTCCAAGTCGATTCCGAAGAAA 904 36 100.0 35 .................................... ATAGGTGTAAATAAAGTAACCGTTTCTGTAGCTAT 833 36 100.0 39 .................................... CGCCGCTACGGCACTGCTTCAACCGTGATCGAGGACTGG 758 36 100.0 38 .................................... CCTATTTTCAAAAACTCGATTTAATAGGCCAGCACCTA 684 36 100.0 36 .................................... AGGGGGTTAGGCGAATCCGATTTGCAGGAAACTATT 612 36 100.0 35 .................................... GAATATTGCGCCTTTAGCTGGCATGCCTACCCCCT 541 36 100.0 36 .................................... ATCTTGCGTGTTCACAAAGACGCTTACCGAATGTAC 469 36 100.0 37 .................................... GATTGGCGTACAACAATTGGGCCAAAACAGACGGTCT 396 36 100.0 37 .................................... TAGTTGGTTAGTGATGAGTGCGCAGCAAGTTACAACG 323 36 100.0 35 .................................... GCATCGAGCAAGCGCAAGGCTTGAACTTGCAGTTT 252 36 100.0 36 .................................... ACCGGAACAGCTACCATTTTTAGCGGCTGGAAGGCC 180 36 100.0 37 .................................... CCGTTGAGTAGGCTCCGGATAAAAAACTGCTGTCGAG 107 36 100.0 36 .................................... TCCTTTGCCGCAAAGCCCAATTCCTTTGATCTATTG 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ======================================= ================== 38 36 99.9 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : | # Right flank : G # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //