Array 1 208075-206226 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRI01000001.1 Salmonella enterica strain GSJ/2016-Sal.-010 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 208074 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 208013 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 207952 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 207891 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 207830 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 207769 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 207707 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 207646 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 207579 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 207518 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 207457 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 207396 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 207335 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 207274 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 207213 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 207152 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 207091 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 207030 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 206969 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 206907 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 206804 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 206743 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 206682 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 206621 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 206560 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 206499 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 206438 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 206377 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 206316 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 206255 29 96.6 0 A............................ | A [206228] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGCCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 225029-224207 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRI01000001.1 Salmonella enterica strain GSJ/2016-Sal.-010 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 225028 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 224967 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 224906 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 224845 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 224784 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 224722 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 224661 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 224600 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 224539 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 224478 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 224417 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 224356 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 224295 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 224234 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //