Array 1 328-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000088.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_88_length_445_cov_64.494220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 327 28 100.0 48 ............................ CATTGAAGCCGGTGCCAACGTACCATCCTCATAAAACATATATCCGTT 251 28 100.0 45 ............................ CATTGAAGCGCCGCGAGGGCTGCATTCCACACGCCGTTCGCCTTT 178 28 100.0 47 ............................ CATTGAAGGGATAGCGCGTGTGATGCCTCCGGCCATGTCCGCGTATC 103 28 92.9 47 C..C........................ CATTGAAGCTCTCATGGACGATATTCCCTGAGGCATCGAGCTCAGGG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 5 28 98.6 47 GTTGATCCGCCGAGATCGTCGGCGGCCC # Left flank : CACACAACAGAAAAGGATTTTTATGGCATGTGTTATCTTTCACGAGAAGTGTGCGTCGTTTTCGCTCGCGATGGAATCAGTCATTCTGCAAAAGGCTCATCACAGTAAAGTTATCTG # Right flank : C # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCGCCGAGATCGTCGGCGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 25779-24779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000015.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_15_length_69603_cov_56.081722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 25778 37 78.4 38 G.CGAGGC................C............ GACTGGCCGAACGCGTGAAAACTATCATGCCGGTCATC 25703 37 97.3 38 G.................................... TTGCCCACCTTTGGAATCATCACGGGCATTTATTTGTT 25628 37 97.3 38 G.................................... GGCGTATCGGCTGCGTGGACAAGCTCCACGATCCCCAC 25553 37 100.0 36 ..................................... GATGTGACGAGGACGGGCGTCGCGCGCCCACATGTT 25480 37 100.0 39 ..................................... TGTGCGGACGCGGCAAGACCAGACTTTAGATAGCCCCAC 25404 37 100.0 38 ..................................... GATACCGACAACCCACTAGGCGCGCCGCCCGGGACGTA 25329 37 100.0 35 ..................................... GACCACATGCCGAGCGCAACGCCCGCCGCTATCGG 25257 37 100.0 37 ..................................... GTAGAACGCAAGGTGGGTAAAGATATTGAATTTGAAT 25183 37 100.0 36 ..................................... GGAGCGAGAGTTTCTGGACTGGTTGGGAGATCAGAT 25110 37 100.0 38 ..................................... ATGAAATTTTTTGTTCATCCGTATCTTTACACGTGTAG 25035 37 100.0 38 ..................................... GACAATACGACAACGGCAGACAACACGACAACGGCAGA 24960 37 100.0 36 ..................................... TACCCACGCGATGAATCCATATCCGGCATCATTCTG 24887 37 100.0 35 ..................................... GTTGCAAACCGGACGTAATCGGAGTACAATGAGGT 24815 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 98.1 37 ACTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAG # Left flank : GTTCGCGCATGGCCGCAAGTCTCAACATCTTTTCGTCAATGTGGCGAACCACGTCCTCGAGCAAGCGCACCGATTCCGAAAGCATTTGGACGTTGTGTTCGGGCTCCCGACCTTCTGCGATTCGCGCCCGATACGCCTTCAACTGGTCTTCTGTGGAAAGAATGGACCGGATCTCTTGCAGCGAGTAGCCCAGGGCTTCCTTGAGGCGAAGAATGTGTTCGATGCGCTCGATGGTGTCTTCGTCATAGACTCGGTGTCCGCCCGGTGTTCGCGGAACTTCAGGAATGAGACCCTTCTCTTCGTAATAATGGAGTGTGCGCGGCGTGACACCCAGCCGTTCCGCCACGGCCTCCACAGTCCATGCTTTGTCGCGATCCATCTTCCACCTCCTCATCTTCTGCCGCACTCCAGTGTACGCCAATCGGAAATTCACGTCAACGTGAGGTTTAAGGCGACAGTCAAACAGGTACCTGACAAGGTAAGAGAACCTTGAACTCGGG # Right flank : GCTACCCTACAGAGCCCGCTCCTGGTGCGGCTTTCCGGGCGAAAATCGCGAACCTATGCGTCGCGCGTCTTGCACACGCCTTCCAACTGCCCTCATCATACCCTCTCACTAGCCAAAAATCCAGTCCCCACGCGGAATCTTTGCATTTCGCGAACCCCCTGGGTTTTCGCCATCGATTCAGGTTCGCGCTTCTTCAATGACGTACGTCGCCGCAAGCAGACGCAACGATCACGTATCCCGACGCAGACGGGACCTCATGCCATGATGGTCCTCTTTCAGCTGTCCTTGTACCGAAGAACTCGAGTTATCGTGTGTCACATGCGCACCAAAAACACATTCTCGAGCTCCCCATCGCGCGCTATAATATATCTTCTACTCCCAGTCTCAACTCCCAATCTCAACGTTGTGAGATCGAAGGGGGTGGCCAATGGGTGAGTGTTCTCGCAGCATACGCTCTCGTAGCGATCTTTGCGGCGCTCTCGGGATTGAACGATGGAGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 48248-49392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000015.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_15_length_69603_cov_56.081722, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 48248 37 83.8 38 T.G.G.T........................GG.... TGAAAGAAGAAGCGATGGAGACGTTGAAATTATGGTGG 48323 37 94.6 36 ..................G.............G.... GCATCCGGCGCGTACATCCGCGTTAAGGACTACCCG 48396 37 100.0 37 ..................................... GATAGAAAGTAAATCTATGAATAGTGGGTAGGAAGTG 48470 37 100.0 38 ..................................... GCGCGATTGGTCTCTTTTTAGGTCCAAATCCGGGAATC 48545 37 100.0 37 ..................................... CTGGACGGCCATCCTCATCCAACACCCACGCTCGCTT 48619 37 100.0 34 ..................................... AAGACGCGACTGTAAAGTTTCTTGTGGTATTGGC 48690 37 100.0 39 ..................................... TTTGCGACGTCCGGTTGATGACCACGAGCGATACGCCCT 48766 37 100.0 38 ..................................... GAGGTCTATGTGCACATGGATGCCGGGGCAGTCACGGC 48841 37 100.0 38 ..................................... GTTGCCATGTCCGATCCTACACTCGAATGTGTCTGTGG 48916 37 100.0 36 ..................................... AGGAGACGATATGATATAATGGTCTCAAACATTAAG 48989 37 100.0 35 ..................................... TTAAGAAAATTGAAGTGATTGACGAAGAGGGACTG 49061 37 100.0 36 ..................................... TGCTGCCGCCATCGTCAAACCGATAAGCGCGTACCA 49134 37 100.0 36 ..................................... TCGCCGACTGCTGAAATTGCTTCCATGCTCGTCCCA 49207 37 100.0 37 ..................................... TCACCGCCGGACTACCGCGAGCGCGTGATTTTTATGG 49281 37 100.0 38 ..................................... GATTGACGCAACGGTGGATATATTTCGTTGTACGAAGC 49356 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 98.7 37 GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Left flank : GCAGCCTTTGGTCCACCTATGCCATCAGCTCCATTGCTGGAGCGGCGTTCAGTGGCTGGATCTCCAAGAGACGCAGGACCGGCGTCGTCATGGCGATGATGATCATCGGATGGGGCGCGACGTTCGCGCCGGTGTTCTGGATCCACGCCTTCACGCTCATCTACGTGTTCCTCGCCTGCGCCGGACTCCTGTTTGGCGGGTATCCACCATTGGCGCGGACCGTCGTCCAGCGCTCTGTGCCGACACAGGTCATGGGACGCATCATGGGCCTACGGGGCTCACTGATTGCACTTGGCCCGCCGCTCGGCTCGTGGCTCGGTGGCATGTTGGACAGATGGTGCAGTCCTTCGGACGCCATCGCCCTGATCGGCATGGCCGTTGTGGCACTCGGATGCTGGCTTGGCTCACGGGATGACTTTCGGAGGATAGAAGCTTAAAAGCGGAATGCATCGCCACGATTAAAGATGTTCGAAGAGGGCGGGTGATTACCGCCCTCTTTG # Right flank : CTCTACGCCCCTGAGCCCGCTCCTGGCGCGGCCTTCCGGGCGAAAATCGCGAACCTACGCAACGCGCGTCCTTCACGCGCCTTCCAACTGCCATCATCATACCCTGTCTATGCTCAAAAATCCAGCCCCCATGCGGAATTCTCGCATTTCGCGAACCCCCCGGGTTTTCGCCATCGATTCAGGTTCGCGCTCCTCACCCCGCCGCTTCTCAGTGTGGTGATCCATGGCACCACACGCCCCGCTTCGCCCCAGACCTCGTCTGCGAACGGGGCCGTCCGAATTCCCCTGCTCCTTATGTTCTCACCTGCTACCCTGCAACCACGCAACAAAAAACGGGGCCACACCGGGCCCCGAAGTGAGTGCCATGCCGAGTTGGAACCATCCTCGCAGAGCGCCGAGATCGCGGGGCTCATCAGCCCGTCGGGCTGAGCCGTCACGCCTCCACAAACTGTTCCTCCTCCGTGGAGCCGGTGAGCGCTGTCGTGGACGAAAGTCCGCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 22837-21370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000038.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_38_length_23259_cov_52.549525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 22836 36 100.0 36 .................................... TATTGTACAATGTTGAAAGTAGGTAAGTGCAATCAA 22764 36 100.0 36 .................................... TGCATCGAAAGATGTTGTTGACTACATTTCCTCTAC 22692 36 100.0 35 .................................... GGTCGGTTTGAGTCGCAGAAAAGGCAACTTGTGCC 22621 36 100.0 37 .................................... TATGCCAGTCTCATCACTGCAGGACAGCGCGCATGGA 22548 36 100.0 35 .................................... AGATCCATTTTTTCTAGTTCATCAGAACCAAACTC 22477 36 100.0 37 .................................... GACTTATATTTAAAAATTTCCCAGCTTCCGGTGTGGA 22404 36 100.0 37 .................................... ATATATAGATCAGAAGAAACGCGAACATGCTCCCAAA 22331 36 100.0 36 .................................... TTTGAAGGAGATTCTATTGATGAGTGCCGAGAGTAC 22259 36 100.0 37 .................................... TTGCCGATAGGTGTTCCTGTTAAAGCCAGTCTCCTTT 22186 36 100.0 35 .................................... TTATTCTTCTACACATTGAAAAGCAAATCCTTTGT 22115 36 100.0 37 .................................... CCGGGTCGTAGTGCATTTCGATGCGCCCCGTCGGGCC 22042 36 100.0 34 .................................... CACAGTACGTGCAAAGCGCGCGGCCTCAGACGAT 21972 36 100.0 35 .................................... TCTCGAGCTCGTCGAAGACGCACTCCCAGGGTACT 21901 36 100.0 35 .................................... TTGATCTTTCCTACTCCTGCCGCGGGTGCCCAGGC 21830 36 100.0 35 .................................... ACGATGTAACCTTCCTCTTCATTACCCCATACGTC 21759 36 100.0 35 .................................... CATACTCATTTGCACTTCTTGTAACGGGAGGCTGA 21688 36 100.0 37 .................................... GCTTGGCTCCCCGCAGGAAAGTCGGCACATGGACGAA 21615 36 100.0 36 .................................... CCCACTTGGTCGTAATCATCTCGCTCGATGTGGGTG 21543 32 88.9 36 ..........----...................... TTCGTGTGGGACGCACCGGATGGGCCGCAATTGGTC 21475 36 100.0 34 .................................... CCGCGACCGCTTGGTACGCCGCGTGGCGCGTGAA 21405 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ===================================== ================== 21 36 99.3 36 GTCGGATCGCCGGGCGGGCGGTCTGAGAAGTGGCAC # Left flank : GCGAGAACCAAGAGACATTTCCATGCACGCACCCTTCGGTAAGAATTCGAAGTGAGTGAGCCACCTTCCTTTCGGTTAGATTTTAGCTGAGTGATCGCGGAAGATTGACTGAGTAGCAGCCATGAAGTATACTGAAACCGCCGATCTATAGGACGGCGTGTTCAACGGGATGTGCCAATGCACTCTTTCCAGGAGTGAACACCCCGTTGGCTTCAAAATGACCGCCCGCCCAACGGTCTGACTTCGAGCGCCGGTTCAGGACGAAATTCCTGGGCGGCGCTCGAACCATTGATTTGGTGGGGAATTGCGGCTGCATATTGTGATGTTGGTACGGGGCCTGGACGTCACGAAACCGTGGTGTAACTGCCTTGCTCGCATGACGGGGCGGGAAAGCTCGTCCAACAAGAAGTGCGAGCACCTGC # Right flank : CTTCAATATAATCGTGTGCCTTGATACGCATGCCGGATGTGTGACAAGCATCGGAGTGAAACGCCCATGGTCAAGGAGCACCCGAAGCGATTTCTCAAGGGATTTAAGGGTTACCTGCACGTGGACGTGTACAGCGGGTACAACTAGATTCCGGATGTGAAGCTGGTTGGATGTTGGGCACACGCCAGGCGAAAGTTTCACGAGGCGCACACCGCGTTGCCAGAAGAGGAGCGAAAGAAACCGACAGCGGCCAGGATAGGATTGGAATACTGCAACCGGTTGTTCAAGATTGAACGCGCCTTAAGGACGCGCCGCCAGAAGAACGTCACGCAACGCGGCAGGGGTTAAGCCGACCGGTGCTGGACGAGTTTGTGGCGTGGCTTCAGGAGCAGGGTGAACAGGTACTGCCCAAGAGCGCCTTGGGGCAGGCGGTTTCGTATTGCCTCAACCAATGGTCGAAGCTCACGGCGTTTCTGGAGGACGGGCATCTGGAGTTGGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGATCGCCGGGCGGGCGGTCTGAGAAGTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 161745-160241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000003.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_3_length_177391_cov_54.822242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 161744 37 100.0 34 ..................................... CCAACGCCTCCCAGACCAACGGCATAGGGTCCAC 161673 37 100.0 35 ..................................... TTTTCATAAAGGCAAAGGGCAATCAGACAGGTGGT 161601 37 100.0 36 ..................................... CTGAACAAGGAAAAGATTCTTGACCAGATTACCGGG 161528 37 100.0 35 ..................................... CGATGCGAGCACAGAATGTAATCGACGAGCTCAAC 161456 37 100.0 34 ..................................... CACCGTGTAGACCTGGCTGACTTGTGCGTTCGCA 161385 37 100.0 36 ..................................... GAGAACGGCGCATGCTTCAACGGATTCAGCGATTAC 161312 37 100.0 38 ..................................... TCGCTTGCCTTGCGTTTCTTCTTCGGCTCGTCCTCGGC 161237 37 100.0 36 ..................................... AATTGGTGCTGATACATCGCGTTCTGCGTGAATTGC 161164 37 100.0 37 ..................................... CCCTCCGCTCGCTCATCGTTGGCCCCGGCGACGTAGA 161090 37 100.0 37 ..................................... CAGAACAACACGGCCGAATTGCTCATGTTGCCAGACG 161016 37 100.0 38 ..................................... TACAAACAATCGATCACATTCCCTACAGCTTTTACGAC 160941 37 100.0 35 ..................................... TGGTTCACCGCTTGCAAGTGGTCGAACTTGATTCC 160869 37 100.0 40 ..................................... ACGTTGAGCGTCGTCCGGATGATGATCTTCTCGGCATACG 160792 37 100.0 37 ..................................... ACGAAGACGTAGCAAAGACCAGGTGTGTTGGAGTCGA 160718 37 100.0 36 ..................................... AGCCAGGAATCACGAAACCGCCGTGCTGCGCGTAGT 160645 37 100.0 35 ..................................... ACCGCATCATCGGACCAACTGGCAAACAGTACATC 160573 37 100.0 36 ..................................... TACGATACGTCGGATACAGCTGTCGCTTCCGGTACC 160500 37 100.0 37 ..................................... CATGACGCTTTTAGAGCTTCGCCACTGCTCAATCGTC 160426 37 100.0 36 ..................................... GGCAGCTCGGTTTGCTGATGATGACGACGCCAATTC 160353 37 100.0 38 ..................................... TGAAAAGCATCATCTGTGTACTTATACACCCAGGCGAC 160278 37 97.3 0 .................................T... | C [160246] ========== ====== ====== ====== ===================================== ======================================== ================== 21 37 99.9 36 CTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : CTCATGTTGGTAACTACATCCATTGACCAACTCGCTCATGGTAAGCCAGGTGGAATGCGTTCGTGTCGGCAGCATCAACCTAGCGCGCATTCCTCGGCTGTTACCCAGAATGTCGTGAAGGCTGAGAACTGAGAACTGTCGCGATGGACTGACTGGTAAGCGTCACGCGACTTAAGCAGATGCTATATGGCTCGCCATATGGCATCGGGGAGCAGGGTGCGAATCCTGCCCCATCTAGTAGAACCACCCGTCGTCTCGCGTCGCCGCATGCTGCACAGAGAACGCGGGCAGCCTATCTTCACGGAGCAAATTCGCGAACCTGAATCGGTGGCAAAAAGCCCGGGGTTTCGCGTTTTACTCGAAAAGCGCGCCAAATCTGGACTTTTTCGATGTGAGGAGGTATGATAGGTGCACAGGATTGTGGTTCAAGGGCGACCTCGTGTGGAGGTTCGCGTTTTTGACCCGGGAGCCCGCGTCAGGACCGGGCTCAAAGGAGTGCC # Right flank : CTGCTCTCCTCTACATGTCTACCGCTGTCTCGCACCATAGAAAAAGCCGCTCCGCATCGGAACGGCCTTCCTGTGCAAACCCATCTCACCGATAGACGTCTCCCCCGCCGGTCCGGAACGCCTCGGCCTTCTCGCGCATGCCTTCGGCGATCGCCTCCTCGGGCTCGAGCCCCCGCTCTTGTGCGTACGCGCGTATGTCCTGCGTGATCCGCATGCTGCAGAACTTCGGCCCGCACATGGAGCAGAAGTGCGCGGTCTTCGCGGGCTCCGCCGGCAGCGTCTCGTCGTGAAAGCTCTCGGCCCGGACAGGATCGAGCGCCAGGTGGAATTGGTCACGCCAGCGAAACTCAAATCGCGCCTTGGAAAGCGCATCGTCCCACTGCTGCGCTCGTGGATGGCCCTTCGCCACGTCGGCGGCGTGCGCGGCAATCTTGTACGCGATCACGCCCTCCTTCACATCGTCCCGGTTGGGCAGCCCAAGGTGTTCCTTCGGTGTCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 15470-16826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000043.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_43_length_16946_cov_52.399122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 15470 37 100.0 37 ..................................... GCGAAGCACAATCGGGCACATATCCGCGTCCACAATC 15544 37 100.0 35 ..................................... GTGACCCAAATGACGTTTGATGTATCTGCGAATCC 15616 37 100.0 39 ..................................... TATTGCAGTCGAATGATTGGCAAAGCATTCCATGCGAGC 15692 37 100.0 38 ..................................... GAACTCGAGTATGTGAACTTTGTGCCAAAGCTCCTTCG 15767 37 100.0 37 ..................................... CCTTCCAGCACTGCTCCCACATCGGGCAGCGCCGGGT 15841 37 100.0 34 ..................................... TAATTATTTTCTACTATAGAAAAGTAGAGGTTTA 15912 37 100.0 35 ..................................... TTGGCCTGGGGCTGGGCGATTGCCGTCGATGGTGT 15984 37 100.0 36 ..................................... AACAAGCGACCCCATCTGAGCGTATGATAATGTTTG 16057 37 100.0 36 ..................................... GCGCCTTAGAGCCCAAATTAAATCGATTTGGTTGCT 16130 37 100.0 36 ..................................... TTAACACTTTCCATGTACATAAACACGTGGCGGAAC 16203 37 100.0 37 ..................................... CCAGAATGGCTGTTGCTCCATTCGTGTTCCCTCCATC 16277 37 100.0 36 ..................................... GCCACACAGCCCAGCCAAAGCGAGGCATATGCTGCG 16350 37 100.0 39 ..................................... GCATCACGGACAGGTATCTCGGGCGAATCAGGCGACGCC 16426 37 100.0 38 ..................................... TTCAATAAGATCCAGAAGCTCCATAAATTCTGGATCAT 16501 37 100.0 37 ..................................... TTATCCATGGAGTATCAGGATTGGATATATGATCATC 16575 37 100.0 34 ..................................... GTAAGCCTGCGACTTATTCCACGTGCCAAGTGAC 16646 37 100.0 36 ..................................... GCCGGCAAGCTCGCGCTTTGGGGCGTTCCGGGTGCG 16719 37 97.3 34 A.................................... CAGCCAAGCGTCACGGCAAGGATGACACCCGCGA 16790 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.9 36 CTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : GCCGGCGATGTTGAGCACCGGAGCGCGTGGACCGCGGAATGCGCTGCGAGGGAATCTGCATGGACGAAATTCGGGTGCAACGAGCGACGCATGAGAGCGGTTCGTCTGTGCATCCGAGGTAGCATGGTGCACTCGGGCATCTCCACTGCTCGGCCACGATGCGGTGAGGGCCCCTCGGGAGACGGCACGCACATCCGCGGTGCTCAAGCGATGGAAGTAGCATTTCGACCTGAATTCGGGGAATCCTGCATCGATTCTGCACAAACAAGGGTCGAGTGATTAGAGTGTTCCAAGGTGCGCAACGGAGCGATGCGCGAACCGGGATCGATGGCGAAAACCCGGGAGGTTCGCGAAATGCGAAAATTCCGCATGGGGACTGGATTTTTGGGCGGTGAGAGGGTATGATAAGGGCAGTTGGAAGGCGTGTGAAGGATGCGCGACGCATAGGTTCGCGATTTTCGCTCGGAAAGCCGCGCCAGGAGCGGGCTCAGGAGAGTAGC # Right flank : GATCCATCTATGTATAATCACGAGCCTTTTGCAGAATCAAGAGCCCTTGTGCGGCAAGGGTTTTTCGAGCACAAAGAAGGACTTCACCCCAACTCGAGAGAAAGAAAATGGTACTCACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 89758-88623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000010.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_10_length_89819_cov_60.555874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 89757 37 100.0 34 ..................................... ACGTCCGTATGTTGCCACAGTCGCGTCCCTGCCA 89686 37 97.3 38 T.................................... ATGGATGCTTACGGCTTTTACGCATTTGGGGACGGGTC 89611 37 100.0 38 ..................................... TCTCATGGACGATATTCCCTGAGGCATCGAGCTCAGGG 89536 37 100.0 37 ..................................... GGCGAGGTTCCGGCGGCGATGGATACCATCGTGCGCC 89462 37 100.0 36 ..................................... AATGAGCTGATGGAGTTTTGCGCCGAGACGTACGGA 89389 37 100.0 36 ..................................... GTAGATGGATTCGACCTTTGCGCCGCTTGCACGTAG 89316 37 97.3 37 ......................T.............. AATGTCAAGATCGTTTTTGATCTTTTCCGCTCACTAC 89242 37 100.0 35 ..................................... GGATATGCCGTCGTTCTTTCTCAATCACAACCCGA 89170 37 100.0 36 ..................................... ACATGGACAGCGACGATGAGAATGGCAGCGTACATC 89097 37 100.0 38 ..................................... AACTCGATGAGCTTCAGCTTGCGCTCCTGCACGCGCGT 89022 37 100.0 37 ..................................... TTCATGCATACGTCGTAACTCTGCAAGCTCACTCATC 88948 37 100.0 35 ..................................... GCGACAGGCCGCCGCACGTCCCTGTACCAAAAGCC 88876 37 100.0 36 ..................................... TAGTGCGTCATAGTACGCCTGGTCAAGATCGTCCGC 88803 37 97.3 36 ....................................A TCGTAGATAGGATCTCTCGGGGATGGTAGGAAACAA 88730 37 97.3 34 ....................................A ATAACCTGGCACCTAAGTTTGAGGTCGTGTTACA 88659 37 91.9 0 ..............................G.TC... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 98.8 36 GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : GATCGTCGGCGGCCCCATTGAAGCTCTCATGGACGATATTCCCTGAGGCATCGAGCTCAGG # Right flank : AGTCGGGGCGCTCCCAGCGCTCCTCCCCCATTTCATGGATCTTCGAAGACTTTTGGCTGGTCCTGAAGGTGTTGTTGGGCACACAAAGGCCACCTGCAGATGCGCCTGATGGCGGTGTCTGAAGGTGGCCTTTGGGTTCGTCTCGACTTGAAGCCTAGCGGGTCCGTCCGCTCAACTGCCCATAGCACTCACCGGTTGGGCCCTCGTGAAGCTGAAGTATTTGTCCAACTGAATGCGCCGCGACACCATCACCTGCTCCACCCCGAGCGGGCGCAGGCCCCCGGTCCGTAAGTCGGGATGCGCGAGCATCCATCGAATGGAACATAAAGTTGCTGGTTCTCTCCATATAGGCCATGCAAGAGAGAATCCTTGGCTATCATAATGCCCGCCAATGATTGCGAGCCGGTTTCCACCGTATGCCGGTGCTGCGGTGAGTACGGAGATGCCGACGGCTGCTAGCCGATTGGCCCCGAGCTGCGTCCCAAGCTTATACTTGGCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 5720-6408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTU010000046.1 Alicyclobacillus mali strain FSL-W10-0037 NODE_46_length_12724_cov_152.024713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5720 37 100.0 34 ..................................... TCGTCACGTTGAGCGCCGAGTTGCCGACGGTCAC 5791 37 100.0 35 ..................................... CCGAACAGGACGCGCAAGACGTTGACGCCAATGAT 5863 37 100.0 35 ..................................... ATCAAGTACATGAGCGGCCCCATCACACGCGTGAC 5935 37 100.0 37 ..................................... GCTGGGTCAACGGCATTCCATGCGGCCCACTCGACGA 6009 37 100.0 36 ..................................... GTATTTGCTTATAAACGAGAATGGGGTTATTCAGTC 6082 37 100.0 36 ..................................... ATCCAGTATGTGACGCTGGAGAATCCCTATGATTAC 6155 37 100.0 36 ..................................... CTCGAGGCGATGGACGAGGCGATGCGCGACGAGTTC 6228 37 100.0 35 ..................................... TGTAATTAAGGGAACATGAAAGGTTTTATATTTTT 6300 37 100.0 35 ..................................... ATAAGTCAGACCTCCTATCAAGTCTCGGCTGCGGC 6372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 36 GTTGCAACCGCCCGTAAGGGCGGTTGAGGATTGAAAC # Left flank : CAGATCGTATGGGTTTGTAAACCCGGCGTTCTGCGAGCAGACAGGTGTCAGTGAAGAAGATCTGGCTTTATTTTGGGAAGCGTTAGTGAATATGTGGACCATCGATCGTTCGGCGGCGCGAGGATTCATGGCATGCAGGGGATTGTACGTTTTTACTCATGAAGACCGGTATGGCAGGGTACCAGCACAGGAGCTGTTCGAATTGATCCAGGTTCACAAAAAGCCAGGTGTGACTGCACCGAGGAGGTTTGGTGATTATGAGGTGAATGTGGCGGACTCCACTCCGGAAGGTGTTGTACTCACCAGAATCATAGGGTGATTTACGCGAACCTGAATCGATGCCAATTTGCCGGGGGGTTCGCGCTGCTCGAAACCCCGCACCACGTCAAGAATACAACAGAATCGTACCCCTCCGGGTTCTTTGGTCAGTACTCAAGAACACGGAAGTTCGCGGATTTGGGTTTTCCAGGTCTGGTATGATGCCAGTTCATAAAATAAGG # Right flank : CTACGCAGATTGCAACCACGACGCATGGAGCGATGAGGGTTGAGAATAGAACTCAGGTGTCGGGTGATCTACCATCCACATGGACGGACACGTCTTCGGTGTGGAAGTTTGATCGATTCGGACCTTGTGGTCATGTATTAAATGATACCATGTCAGGATGGGGGCTCGGACCTGGCTTCGCAGTTCGATCGATATGTAGACTCATGGATATGAGCCCCTTATTGCGGCGAACTTGCCGAATCTAGCGGCAGACGTGCGCTGCTTTGTTATGGTGTAGGTACACTACATACGTATACTAATACAAGTGTGCTAAACGTCTATCACAATCCAATCCTCGCCGCTGCATTTGAACGAAACAAGTTGCTATCTCGGATATATCTCCGCACCATCAATGGGCTCCTATGTCCCGTTTGGGCCATGATGTCCCGTTCCGACACACCAGCCATCGCGGCGGATGTCGCAAGGCCTGCGCGTAGGCTGTGGCCGGCATAATGGCGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGCCCGTAAGGGCGGTTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.80,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA //