Array 1 311477-313494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050500.1 Lacticaseibacillus paracasei strain NFFJ04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 311477 36 100.0 30 .................................... AATATGTGAATATTGTGATCAGCGGAATGT 311543 36 100.0 31 .................................... AAGGCATCTGTCAAGGTAACGTACGCCCACT 311610 36 100.0 31 .................................... CCAGTTTTTGGGCATACCGCACTAGATAATG 311677 36 100.0 30 .................................... GTGCTGTCATCGGCCTTTACTTCCGTGCGT 311743 36 100.0 30 .................................... TTCTTTTTTATCTTGATTGCCGTTATTAAT 311809 36 100.0 30 .................................... TCAACGCCGATCCGAAGAACACTGGTGTTT 311875 36 100.0 30 .................................... GGATTATGCCGTTTATATTGAGCTTGCACG 311941 36 100.0 30 .................................... TGGCCCAATGGTTTGTACAAGCCCCATTGA 312007 36 100.0 30 .................................... TGGATGTTGATGACTCGACGCTTATCAATC 312073 36 100.0 30 .................................... CAAAACTCCACTTCAAATTACGACAACATT 312139 36 100.0 30 .................................... GGATTATGCCGTTTATATTGAGCTTGCACG 312205 36 100.0 30 .................................... CAGTTGAAACAAATCAAATACACCATTCAT 312271 36 100.0 30 .................................... TCAACGCCGATCCGAAGAACACTGGTGTTT 312337 36 100.0 30 .................................... ACATTGCAAAATGTCGAATTGATCGGACGG 312403 36 100.0 30 .................................... TCTCATCGACGTTTGCGAAACAACGGTGAA 312469 36 100.0 30 .................................... TTATCGGCTTCACTATCTAGCTGAGCCTGC 312535 36 100.0 30 .................................... TTCATAATTAAAAACTCCTTTTCTTTACTA 312601 36 100.0 30 .................................... AGGCCGTTGGTTTCAGTGCCAATGGCATCC 312667 36 100.0 30 .................................... GTGCTGTCATCGGCCTTTACTTCCGTGCGT 312733 36 100.0 30 .................................... GGAAGCCAACCGCTATGCGGAGTGTGAACA 312799 36 100.0 30 .................................... CGTGTTGGCGTCTGGATATGAAGCGAGAAC 312865 36 100.0 30 .................................... GTTCAAAAAACAGCGAAAAGACGAACGACG 312931 36 100.0 30 .................................... TGGCCCAATGGTTTGTACAAGCCCCATTGA 312997 36 100.0 30 .................................... TGGATGTTGATGACTCGACGCTTATCAATC 313063 36 100.0 30 .................................... CAAAACTCCACTTCAAATTACGACAACATT 313129 36 100.0 30 .................................... AAGTTCCCCGGCCACAACGATGTTTATAAC 313195 36 100.0 30 .................................... TTGGGGAACAGAAAATATTACGTTCCTACT 313261 36 100.0 30 .................................... TAATAAGAGATTAAATAAGCTTGAAAATAA 313327 36 100.0 30 .................................... TTCAGTGATCGTTTGTCTGATAATCGTATA 313393 36 100.0 30 .................................... TGTTGCCGCTAATTTGTCAGTATATCCTAA 313459 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGTATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGTACATTAAAATCCGGTTATAAAAAATCG # Right flank : CTATGTGCCGCTGTTCTACAAAGGCAAGCGGGTTTTAGAAGGATGTTAAATCCTAGATTGCAATAATAAAGTTACCACCTAGAAAGAGGCTTGCTCACTGCTTGAACTGGGGTTTGCCAACGGAGACATTTTCTAGGTTTGTTATTGATAAGCGCTGTGGCTTGTTGAATATCGGTCTCTGAAACCTGATCAAACTGTGTTTCCTTCGGGAAATAGTAGCGAAGTTCTCGATTGAACCGTTCATTTGTGCCACGTTCATTCGGGTGATAGGCGTGGCAAAAGTAAACCGGTATCCGATAGCGCTTTGTAAGCGCCTGATCGCAGGAAAACTCTTTACCGTGATCAACCGTCACTGATCGAACCGGACCCGGAAAGTCCACCATCAGTCTTGCAAATCCCTTGAGAACAGCATTTTGTGATAAGTTTTCAAGCTTAGTTGTCGCCATTAAACGTGTCACCCGATCGACAATGGTCAAAACAGCAGCCTTTGACCCGCGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 314645-314880 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050500.1 Lacticaseibacillus paracasei strain NFFJ04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 314645 36 100.0 30 .................................... CACCAATTCAGGCGACCCACTATGGACGGG 314711 36 100.0 30 .................................... GGTCACAGTTTGTGAGGATATTGCACATTC 314777 36 100.0 30 .................................... CAAGTTTAACCATGAAAGTATTTCTGATGA 314843 36 83.3 0 ................G....C.CT...G..T.... | GG [314863] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : CTTGGCTGAAAATCGACTTGTCTTTGATAAATCCAGTGATAAATCGTGTGTGGCGCACAGTGAACGGCATAACCGACCATTTCAGGGGACCAACCTAGGTTTAGCTTCTCAGTTACCATCCGCTTCAACTTAGGCGTTAAAATCGAGTGCCGACCACAACGATGCCGACAAGTATCGGCATGATCCTGAGCTATAATGGCGCAGTAATCACCTTCAGGGCAACGGTGAAGCTCATGCCTAATAGAAATACGAGAGCGGCCTAAGGTCGCGGCGATGTATTGAATCGTGTGGTGTTGCATCAGTTCTATCTGAGATCGTTCAATTAAGGTTATAATGGCCATGGGACCTGTCCTTCTCTCTAGATGGTATGTTATGCAAACACCATTTTAGCAAGAACGGACAGGTCTTTTTTCACATTTTCTGGGTGGTAACTTTAATTATGCAATCTAGGAATCAATAAGGTTAAACCCACATGATGAATGCGGCAAAGGGACATGTAG # Right flank : CTAGTGGCCGTTTTTTGCTTAGTGCTATACTGGTGATTATAAATGTTCATTAGAACTGTCCAAAAGAAAGTGCTGAAAATGGCTAAAATAGGTTATGCTCGCGTGAGCTCTAAAGAGCAACATTTAGACCGGCAGTTAGCTGCCTTAAAAGGCGTTGACAAATTATTCACAGATAAACTAAGTGGAGCTAATACTAATCGACCAGAACTGCAAAAACTTCTGGCTTATATCCGCAAAGGTGATATTGTCATAGTCACTGAGCTAGATCGTTTAGGCAGAAACAATAAGGACTTAACTCAGATTATGAACACCATTCAAAATAAAGGCGCCACCCTAGATGTGTTAAATTTGCCGTCCATGACTGGGATTGCTGATCATAACTTACGTCAACTGATGACTAATCTCATTACAGAACTATATAAGTATCAGGCCGAAAGTGAGCGTAAGCGAATCATTGAACGTCAGCAACAAGGAATTGCTCTGGCCAAACAGAAGGGTAA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //