Array 1 16881-16242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWX010000003.1 Dickeya oryzae strain FVG03 Dickeya_oryzae_FVG03_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16880 29 100.0 32 ............................. CGACGGGTAAATTTGAGGTGCAACATGTTTTC 16819 29 100.0 32 ............................. CAACAGATGATATGGACTGTTATCAGTCGGGT 16758 29 100.0 32 ............................. ATCGGCAACATCCGCCAACTCTGGCTGTTCTG 16697 29 100.0 32 ............................. GCGCTGTTTGACGGGTTGACCCACGCGGGTGT 16636 29 100.0 32 ............................. ATCATCTAGGTGAACTGTACGTGCCGGGCAAT 16575 29 100.0 32 ............................. CGGCAAACAGCAGCAACCTATCGATAATCGCC 16514 29 100.0 32 ............................. TTTGACAGGGAGCGCTGCAGCGCAGAAATGGG 16453 29 100.0 32 ............................. CGTTATCGCCCGGAAGACTTTGAGGAGTACAT 16392 29 100.0 32 ............................. GGTGGCTGAATCACGCGACTTAGATGCCAATT 16331 29 100.0 32 ............................. CCATAAGGCATTATCCTAAGTTTGTTAATAAA 16270 29 82.8 0 ............TT...........G.GT | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTAGTAATGCCGGTATAAAGCCACCCGCTGCCAGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGGAAATTGCGACCTTTATTTATCAATGAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : GAACGTAGTAGCGCGGCACAATCCGTCGCGATGTCCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTTTAATTTCTTTTTTATGTGAATAAAACCACAAAATGGGTTGTCATCTCCGGGTGAAATAGCAGTATTCGCCGGAGATATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCCGCTATTTGCATCTATCCGCGTTTCATACCGCTGGCGCGCAAGGTGCTGCGTGAGCAGGGTACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATTGCGCTGGCGGAAACCAATGCGGCTATCGCCTATGGTGCCGACGAGGTGGACGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 268444-267622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWX010000003.1 Dickeya oryzae strain FVG03 Dickeya_oryzae_FVG03_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 268443 29 100.0 32 ............................. ATCGAGAAGAATGGCACCTTGCATCTGGAAAA 268382 29 100.0 32 ............................. TTCAATCAAATCGCGGCGCAAGCCAACCAGCA 268321 29 100.0 32 ............................. CGCCATACCAGCAGGCTACCGTTACGGTCCAT 268260 29 100.0 32 ............................. GCCGCACGAGCTTTCGCCGACCGCCAGCGCGG 268199 29 100.0 32 ............................. AGATTATTGAACTGGCGAAAACAGAACCGAAC 268138 29 100.0 32 ............................. ATCGAGCAAGGCCGTGATGCGGTCTGGCAACA 268077 29 100.0 32 ............................. CCGGTGACTGTACATAATCACTATGGGGTTCA 268016 29 100.0 32 ............................. CCACTCGCACAACTCCGGAAGGGTCCAGTGAA 267955 29 100.0 32 ............................. TCTGCCTTCGTGCGAACGATGTCGTTCTCCGG 267894 29 100.0 32 ............................. TCGTCTGACAGACATCGTACGAAAATCGGCAA 267833 29 100.0 32 ............................. AGAGGGGCGTAGAAAAGGCCGCTTATGCGACC 267772 29 100.0 32 ............................. GAATTCAGCGAAATCGCGCAGACTGAAATTCT 267711 29 100.0 32 ............................. CGGCTGTCGATGGAGCTACGCACACAGAGCAA 267650 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCTGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACAGAAAACGTGCCGCCACGCCTGCGTGGTCGGCTGGCGGTTTGGCTGCTGGAGGTGCGTGCTGGCGTCTATGTGGGTGATACCTCGCGTAGGGTACGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTAGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGGCGGATGCCGGTGGACCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGTGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATAATTTTAGA # Right flank : GAAACAAAAGGCAGAAACAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGGTTTTTTGAGTGCCAGTGTTTTCGCTGCCGGTGCCGATGAAGGGGAAATCATCGGTCGGTTGCCCGCCAGATTGTAAGACCCGCTTCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATTTCGCCGACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154507-155136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWX010000004.1 Dickeya oryzae strain FVG03 Dickeya_oryzae_FVG03_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 154507 28 100.0 32 ............................ ACCCCTGCGCCGCCGCAGCCAATAACGCACGT 154567 28 100.0 32 ............................ TGCCGACGGATATCATGACTGGCAGCGTTGAT 154627 28 100.0 32 ............................ TGCGTCAAATCGCTAAAGACCGCCTCTCCGAT 154687 28 100.0 32 ............................ AGTGGCGATAGCACCACGCCCGCGTAACACCT 154747 28 100.0 32 ............................ GTAACGGAAATTCTGCCCCCGTTATCTTTTAT 154807 28 100.0 32 ............................ ATAGAGCGCCATGCGATTCGCTTTTGCCGAGT 154867 28 92.9 32 .................T......T... GTACTGCAAAAGCGCCTGTGTCCAGAGAGCGC 154927 28 96.4 32 ...........T................ ACTCGGTATCCTTGCGGCTCCACTGCTGGTAC 154987 28 96.4 32 ...........T................ ATTATCTATCGTGGTAGCGTGCGTCGAGTCAC 155047 28 96.4 32 ...........T................ GCATTGTTGGATTCATATTAACCAAATCTATT 155107 28 78.6 0 ...........T.C.........G.TGG | GG [155128] ========== ====== ====== ====== ============================ ================================ ================== 11 28 96.4 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTAACCCTTTTTTTTCGCGCCGTTATAACTCGTTGATTTTCAATGATGACAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCAAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACAGCCCCACATACATTCGACAAACACATTCGCCAGCAACAGCCCCTAACACGCTACTCAACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATTGCCATGATCACCAGAATCCCGGCAAGAAACAGCAGGCACAGAATGTTGGTCAGCGGGTAGCCCAGGCTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160393-160245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWX010000004.1 Dickeya oryzae strain FVG03 Dickeya_oryzae_FVG03_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160392 28 100.0 32 ............................ ATGTCGCAATAGCCGCTGTCGCCGCCATCGCT 160332 28 100.0 32 ............................ GTCGCCATGGTGAGGCCTATCCAATCGTCAAT 160272 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACCGCACCGACAGGTTCACTGCCGCATAGGCAGCTTAGAAAGCCATGCCTATCATGGCGGGCTTCAAATCAATGTTCACTGCCGCATAGGCAGCTTAGAAACAGCAGGCAAAGCACGTCATCTACGACGAGGTGTTCACTGCCGCATAGGCAGCTTAGAAAGCTTTCGACATGCGAACGATCGGAGCGATAACGTTCACTGCCGCATAGGCAGCTTAGAAATGGACAGAGCGGTTATTCTGTCCACCCCGCCCGTTCACTGCCGCATAGGCAGCTTAGAAAAGTACCGCAAAAACGACATTTCCAGCCTGACCGTTCACTGCCGCATAGGCAGCTTAGAAATGTTTCATATCCGCACCAGATTCGATGATTGCGTTCACTGCCGCATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCATAGGCAGCTTAGAAAATTATTTACGTCTGGTATTCTGATGTAGTCAC # Right flank : CGCAGGGATTTGTATACAGTCGGTCACGTGCCGTTCACTGCCGAGTAGGCAGAGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCACCCACCGCCCTCACATACATTCGACAAACACATTCGCCAGCAGCACCCCGGCTGTTGCCAACAGCCCATCCCCGGCGGGCATAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCAGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 161121-160552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWX010000004.1 Dickeya oryzae strain FVG03 Dickeya_oryzae_FVG03_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 161120 28 100.0 32 ............................ GGTGTTACTGGCAGCTGAGCGGTAGCCGGTGT 161060 28 100.0 32 ............................ TGCTCCAACTGCAATGCTGACGTCAGCTGATG 161000 28 100.0 32 ............................ GGAAACGGCTAAAATGCACCTGCCTGCTGCAT 160940 28 100.0 33 ............................ CAGGGTTCACCGGAACACCAACCGCACCGACAG 160879 28 100.0 32 ............................ GCCATGCCTATCATGGCGGGCTTCAAATCAAT 160819 28 100.0 32 ............................ CAGCAGGCAAAGCACGTCATCTACGACGAGGT 160759 28 100.0 32 ............................ GCTTTCGACATGCGAACGATCGGAGCGATAAC 160699 28 100.0 32 ............................ TGGACAGAGCGGTTATTCTGTCCACCCCGCCC 160639 28 100.0 32 ............................ AGTACCGCAAAAACGACATTTCCAGCCTGACC 160579 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGTACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTACGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGTTGGCTGACCGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGTAGCCTTTCCAGTGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGTCGCCAGAAAAAAGGGTTTTCCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : TGTTTCATATCCGCACCAGATTCGATGATTGCGTTCACTGCCGCATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCATAGGCAGCTTAGAAAATTATTTACGTCTGGTATTCTGATGTAGTCACGTTCACTGCCGCATAGGCAGCTTAGAAAATGTCGCAATAGCCGCTGTCGCCGCCATCGCTGTTCACTGCCGCATAGGCAGCTTAGAAAGTCGCCATGGTGAGGCCTATCCAATCGTCAATGTTCACTGCCGCATAGGCAGCTTAGAAACGCAGGGATTTGTATACAGTCGGTCACGTGCCGTTCACTGCCGAGTAGGCAGAGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 170517-172111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWX010000004.1 Dickeya oryzae strain FVG03 Dickeya_oryzae_FVG03_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170517 28 100.0 32 ............................ TTACCAAGACTGGGGTCAAGGGCACCATAGAA 170577 28 100.0 32 ............................ GTTATTAAATGCCAGTGGCGAAATCACGGATA 170637 28 100.0 32 ............................ CAGGCCGTGCGGGGTTCCGTCGGGGGTGGTTA 170697 28 100.0 32 ............................ TGAGAGCCAGTGTCTTTCGCGGTCAGCGTTAA 170757 28 100.0 32 ............................ TTTGTGTCCAGGTGCGCGGGGGAATGAAGTGG 170817 28 100.0 32 ............................ GCCTTCCGAGGCGGCATGAATGAAACCACTGA 170877 28 100.0 32 ............................ TATCTGGTGCCGCGTGAGTGGGATGAAGAGGC 170937 28 100.0 32 ............................ GAAATGGCGAACCTGATCGATAACCCGCCCGA 170997 28 100.0 32 ............................ GAAAACGAATGGGGGATGTCGGTTGTTGAGCG 171057 28 100.0 32 ............................ GATGTAGTCGTTTCCAGCTCACTCCCGGTGTG 171117 28 100.0 32 ............................ GACATCAGCGCAAAAATTTCGGAAATCGAGGC 171177 28 100.0 32 ............................ GTTGAAGGCAATGGCACGCTACTGAAAACCCT 171237 28 100.0 32 ............................ CCCATATGCGGTCGCAGATTATTAACTCTGCT 171297 28 100.0 32 ............................ TCATCGGCTGCATTCTGTGTCACGAGGGCGAC 171357 28 100.0 32 ............................ TGTTAATGCAGGGCTGGCGAGCGGTGCCAGCA 171417 28 100.0 32 ............................ GGGTGTTATAGATTTCATACGAATAAACGGTA 171477 28 100.0 32 ............................ GAAGCGCGAGCCAATGGCGGTTACGGCTTCTG 171537 28 100.0 32 ............................ AACAGCGTTACCCAGCCCAGAAATCTCATTTG 171597 28 100.0 32 ............................ TCAGCGTTCGGGGTTTCAAAGGGGTTTCCCCT 171657 28 100.0 32 ............................ TCTTACCCTCATTCAGTGGTTTCATTCATGCC 171717 28 100.0 32 ............................ AGCAACACCGGCGACTACTCCGCCGCCAGCAA 171777 28 100.0 32 ............................ AGCTGAAAGTAATGCTCGCCATCATGCGCAAA 171837 28 100.0 32 ............................ CACACGCAAAAAATCAGATACAGTGCTGCTGT 171897 28 100.0 32 ............................ GCTTGATAAATGCTCGCTGAAATATGTTGTCC 171957 28 100.0 32 ............................ TCCCGGTTCATGCGCAATAGCAACTCTGTTAA 172017 28 92.9 32 ...........AG............... GCGAAGTTGAGTTTTACCTTCTAATTCATTCA 172077 28 89.3 0 ...........AG..............T | GAT,GGGA [172088,172093] ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTGACCGAGGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGTTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGACTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCTATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTTAATACCCTTTTTTTCAGCCGTCTTTTTCAGTATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACAGGCTACA # Right flank : TACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGTAAAAGCGGTGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAATCCTCACTATCTAACGCCCGGATCTAACGCCCGGGAAAGGGCAACCTGTCAAAACGACGCCCAATCACTATTGCTACCCGCCGCCGCCGTGGCCCGCTTTTCCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //