Array 1 89361-90408 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARWR01000001.1 Pasteurella multocida 671/90 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89361 28 100.0 32 ............................ CGCCCTTGGCTTAGAAACGGTCGAAATTAATT 89421 28 100.0 32 ............................ TCATGGGAAATGAAAAAGAGCCGTTTAACTGG 89481 28 100.0 32 ............................ ATCAACGCGCACTTTTCCGCCGGGCAATACTG 89541 28 100.0 32 ............................ GTGAAAATTTTCCGTGAGTTTTCGCGCATTAG 89601 28 100.0 32 ............................ GCGCTTGTGTTTCTGTCGGGCGCAATAAGATC 89661 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 89721 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 89781 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 89841 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 89902 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 89962 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 90022 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 90082 28 100.0 32 ............................ CCTAGCACGACGACATCACCACTTTTAACTGT 90142 28 100.0 32 ............................ CGATTTTTTAATCCTTCGTCAATTTCCACTTC 90202 28 100.0 32 ............................ ATCATAACTGCCTTTAATTAGATTAAAGCACC 90262 28 100.0 32 ............................ ATCTTGTAGTCGATGTGCTGACTTGAACTCTG 90322 28 100.0 32 ............................ TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 90382 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTAA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAGTGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15476-16163 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARWR01000005.1 Pasteurella multocida 671/90 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15476 28 100.0 32 ............................ ACATAAAACACCTGTGTTTTTATACAATATTT 15536 28 100.0 32 ............................ CTCGTTTTGTGGATTTGCTTGAGTTGGAACTT 15596 28 100.0 32 ............................ GAACAAAGCAGTAGAAATAAGTGAAGAGCGTT 15656 28 100.0 32 ............................ CAAACATTGTGATAAGCGAATTTAGAAACGCA 15716 28 100.0 32 ............................ TCGTGTCAATTGGAAGATTATCAAAAATACTT 15776 28 100.0 32 ............................ AATGGATAGCATTGCTTATTAGTGAAGATAAA 15836 28 100.0 32 ............................ TTGCACAAAGTCAACGCAACCGCATCACAGCG 15896 28 100.0 32 ............................ ATTTATCGAAACAAGATGACTTCTTTCACCGA 15956 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16016 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 16076 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 16136 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //