Array 1 57231-61737 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEJW01000027.1 Plesiomonas shigelloides strain G5890 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57231 28 100.0 32 ............................ TCGGTGCTGCGACGTCAATTGAGGGCGCACTA 57291 28 100.0 32 ............................ ATTAATGGAATGGATAAGCTAATCAATACTCA 57351 28 100.0 32 ............................ GCACCTGATTTGTGCGAAATATGAATACTGAG 57411 28 100.0 32 ............................ AGCACATTCGGGTGACGGGCGTAACTGGTCAT 57471 28 100.0 32 ............................ GTCCGTCTCAATTTCTGGGGGAAACGCCTGCA 57531 28 100.0 32 ............................ ATAAAGCGAATTGTGCGACCTACCGGCGTTTT 57591 28 100.0 32 ............................ TATAAAAGTCAGCAACAAACGCTGCAGGCGTT 57651 28 100.0 32 ............................ ATTCCTTGCCAGTGCTGCCCATCATATTTACG 57711 28 100.0 32 ............................ TGTGAGCATTAATAGCCCTTCAGGAATGCGAA 57771 28 100.0 32 ............................ AGATTATGGAGCAGCACGCCTACAACGATATC 57831 28 100.0 32 ............................ TCATGGGCATCGTCACCAATAAGCATTCTACC 57891 28 100.0 32 ............................ TGCTCAGTCTGTGGAACAGGAAAGATGGTTCC 57951 28 100.0 32 ............................ TGAATTACGAATCCACCCTGCTCGACCACATG 58011 28 100.0 32 ............................ ACGTGGTCCGGCGCCCACTTGGCGGCGGTAAA 58071 28 100.0 32 ............................ ATCAGAATTATGTTGCAACTCATTCCATTTAC 58131 28 100.0 32 ............................ TACGAACGTGCCTATCTGAGATGCCAACTGCA 58191 28 100.0 32 ............................ ATTCTCACGAACAGAGCGAATCTTTATCGTGT 58251 28 100.0 32 ............................ GAATAGCTTACCACCAAGAAGGTTATCGACAA 58311 28 100.0 32 ............................ AATCACCTATAAAGACGCTTTAAGCTAGGCAA 58371 28 100.0 32 ............................ TAAATGGAGAATCGTCATTATGTTGTTTATTG 58431 28 100.0 32 ............................ TACTGACAGCCCAGCCAATAAAACAAATATAG 58491 28 100.0 32 ............................ TTGGCAACGGTTGGTTTTACACTGAAGATGCT 58551 28 100.0 32 ............................ AGAACCTAAATTCATTGTCCCAGCATCAAACA 58611 28 100.0 32 ............................ TTAACCCGCACGATACAGGATACGCCACGTAT 58671 28 100.0 32 ............................ TAAATAAAGGCGTATCATTAAAACACTATTTG 58731 28 100.0 32 ............................ AGAAGATAAACCGAGCAACGATGTTTATATGA 58791 28 100.0 32 ............................ TTAACGCCAACGCTACCAGCCGGAACCTTGTC 58851 28 100.0 32 ............................ ACGGCACGGCGGCGGCTTTGGTCTATCTGCTG 58911 28 100.0 32 ............................ AACTGTTTAAACCTATCAATAAAGCTGGGTTT 58971 28 100.0 32 ............................ CAAATGATCTGAGTCGTGAGAAGTGGAAGTGT 59031 28 100.0 32 ............................ GTGCGACAATGCAAAGGCTGACTTTGTGACCA 59091 28 100.0 32 ............................ ATGATGACGCTTTAGACCGCTGGCTAGATAGT 59151 28 100.0 32 ............................ GTACACGCAACCTGCATATGGCGAAAACTCGT 59211 28 100.0 32 ............................ TTAGTGGTGCAGTCCTCAATTAAGATCACCAG 59271 28 100.0 32 ............................ ATATTATTCACCTACTGGAAAAGGACAATTAG 59331 28 100.0 32 ............................ TTGTAACCATCTGCTGATGTTGCAGTAGCCCA 59391 28 100.0 32 ............................ AATCAGTGATGCTGTGCTTGATGCGTGGGGCG 59451 28 100.0 32 ............................ TTCATACTGGCACTCAAAGTCAGTGTGTCCAG 59511 28 100.0 32 ............................ AAGATACGGTCGACCATCAGAACCCAGCGCAT 59571 28 100.0 33 ............................ AACTGTGAAGCCCTCCAGATTGGGTATGCTGAG 59632 28 100.0 32 ............................ AGTGTGTGTATGGAACAACACAAAGGATTTAC 59692 28 100.0 32 ............................ TGTTGGGGACGGTAAAACGTGTGACAGGCACT 59752 28 100.0 32 ............................ ATATGTTTGGCATCGTCCTGTTAGCTCGTTTG 59812 28 100.0 32 ............................ ACTAAGGTTGCACTACTTAAAAATTATATCTT 59872 28 100.0 32 ............................ GTCTAAGCAAAAATCCATCGGGCGCAGGGGCA 59932 28 100.0 32 ............................ CGAAGCGGCAACGGCTGACGGCGTACCATTAC 59992 28 100.0 32 ............................ AGTAACGTATTCACGCGACTGATAATCGTAGA 60052 28 100.0 32 ............................ GGCAACTCACACCTGCAAAATTCACCTCGTAC 60112 28 100.0 32 ............................ TAACTTTCTGTGTGCGCGTAAATTGATAGTTC 60172 28 100.0 32 ............................ AACTCAGGGGGAGTTCACTAGCGGTGATGTAA 60232 28 100.0 32 ............................ TGAAGGTACAGTGGTTGATGTGAAGGTTCCGG 60292 28 100.0 32 ............................ TGTCGTGTTTGTTCCGCACTCGTTAGCAGTCG 60352 28 100.0 32 ............................ GTGAACATCTACGGCGTGACGGTGTTCAGCAA 60412 28 100.0 32 ............................ TAAAGTAACCCTACTAAAAGAAATCGCCGCTA 60472 28 100.0 32 ............................ CAAGACGAAATTCTGGAAGCAAACGGGAATGA 60532 28 100.0 32 ............................ TTGGAGAAAAATTTATTCAGAAGCGCAAAAGC 60592 28 100.0 32 ............................ ACACGTTTAACGGCGGCAGCGGCGCTTTTAGC 60652 28 100.0 32 ............................ ACACGTTTAACGGCGGCAGCGGCGCTTTTATC 60712 28 100.0 32 ............................ TCCACCAAATAAAAACGATGATTTAGGAACGG 60772 28 100.0 32 ............................ ATGATTAGAGTTGACGCCCCAGAAATCGCAGA 60832 28 100.0 32 ............................ ACAGCCGAAGCGCAGGCCGGTACTGTAGCCAA 60892 28 100.0 32 ............................ TCAATAAAGACGCTTTAAGCTAGGCAATTAAT 60952 28 100.0 32 ............................ CGTTATTCGTGGTTGATGAAGCGCATTTATCA 61012 28 100.0 32 ............................ GTGAATTAGTGACAGATGGTTCATTACTAATA 61072 28 100.0 32 ............................ GGTTATGGCCGCGATGTGAAAGTTGGTGATGA 61132 28 100.0 32 ............................ AAGTACAACACCTTCGACGAGCCGTTGAATGT 61192 28 100.0 32 ............................ CTAATAATTTCATAGGGCATGTTTTAAAATCA 61252 28 100.0 32 ............................ GTGACCGTCTGGGTAAGTGGTTTGCGCCGGAG 61312 28 100.0 32 ............................ TCCTGTTTCGTGTTGTACAGCAGGTCGTGCTC 61372 28 100.0 32 ............................ AGTATGAGCCGTGCTCTGCAAGCAGCTTCTCT 61432 28 100.0 32 ............................ ATAATGGCGATGCATTGTCATATACTCACAAA 61492 28 100.0 32 ............................ CGATACCACCCACTCTCACGCATGAGTCACCT 61552 28 100.0 7 ............................ TGGCATT Deletion [61587] 61587 28 89.3 32 .A.G..A..................... GGTGGTCAGTCGGCTGCGCTCTGCAAGCATGT CGG [61600] 61650 28 92.9 32 ...........A......C......... ACGTACTGTATTACGTGGGTAGACTAACCGGA 61710 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================= ================== 76 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGATGTGACATACGTAAGCTTTGTGCGCAAGCAGGTAAAATCACCGGAGCGTATAGAACGGGACATGCAGCAAAAAGCCACATTATGGGCAGCTAAATCTGGTAAATCGCTAGAGGACTGTTTAGCGGATTTAGAGCAAAGTAAACCGACAGCATTTTGTTCTTTGCCGTTTATTTACTTGCATAGTCAGCAAACTAAGCAGAGATCACCAGAAAAAAGTAGCAAGTTCCCACTGTTTATTCAGATTCAGCAACAAAGGGCACCGCAAGAAGGGCAATTTGATTGCTATGGGCTGAGTGCAAAAATAAACGGGCTTCCGGGTCTGGCTACCGTTCCACACTTTTGAATAGGACGAAAAAGGGTAAGTTTTACCCTTTATATTGCTCTTTAAAAATATGCTTTAAATACATATAGTTACATTGGGTGGTTTTTCATAAGGTAAAAATGCATTTTTAACTCTAACTACCTGTTGTAACGTATTTTTATTGATTTTCTCTATT # Right flank : AGATAGGATTAGCTCATCACAGTGGCTAGCAAAATCACGCTTGAAATCATAACAAATGATTAGTGATTACTTTGTTAGGTAGACAGCCATGTATGTACACATTAGAAAATACCGCTTGGTCAATGCACCTTGGCGTAACGTGATCAAACTTGATGATTACGATGTGCTCATCAAGCAAATTATCAGTAGTGTATTTGGTGCCGATCTTGTTGATGTGGTCGTTGAAGAGAGTTCATTTACCATTATGGTCAATTGTGATGCGGAGAAACTGCCTCATGGCGTACTGGTGAATATGGGCAAGAAATTAGCGGCAAATCTGCAACACATCACTGCTTGCGCGATGCGAACTTATCAAGTGAAGTCACATCCCGATAGCCGCCAACTGTTCCATTGTTTTGATGCCGCATGTTTATGATCATACACCCAATCCCTTACATAGGGATTGGGGTGATTCTGTTTCTTATGGCTAAGCCAGGAACGAGGGAAATTTGCTGTGCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //