Array 1 1017-2859 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNN01000260.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1504 NODE_260_length_4595_cov_5.24037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1017 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1078 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1139 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1200 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1261 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1322 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1383 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1445 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1506 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1567 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1628 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1689 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1750 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1811 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1872 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1933 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1994 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2055 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2116 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2178 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2281 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2342 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2403 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2464 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2525 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2586 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2647 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2708 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2769 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2830 29 96.6 0 A............................ | A [2856] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15970-16912 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNN01000032.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1504 NODE_32_length_31968_cov_6.02327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15970 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16031 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16092 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16153 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16214 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16275 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16336 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16397 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16458 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16519 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16580 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 16641 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 16702 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16763 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16824 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16885 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //