Array 1 35694-36882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXF010000054.1 Streptomyces sp. J2-1 54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35694 29 96.6 32 ...........G................. CCGCTGTGGATGGCCGTGCAGAACCTCGTCAA 35755 29 100.0 32 ............................. CAGTACGAGCTGGACTCGAAGAGGAACTGGTT 35816 29 100.0 32 ............................. GTCACCGCCGAGACCCTGGACGCCATCTCCAA 35877 29 100.0 32 ............................. CGTAGTGCGGCGTGAACCCATTTCGAATGTCA 35938 29 100.0 32 ............................. TGGACGATGTCGTAGGGCCGGTAGTGCCACTG 35999 29 93.1 32 .T.........G................. GTGGCCCAGGCGGCGCTCAAGGCGCTCGGCTA 36060 29 93.1 32 .T.........G................. ATCACGACGGAGTCGCAGTACGTGTGCGGTGC 36121 29 93.1 32 .T.........G................. CACACCGCGCACGGGCACAGCGACGGCCCGAA 36182 29 89.7 32 .T.........G................G TCGGCGGCCCCGGCGAAGCGTCCGGCCGGTCC 36243 29 93.1 32 .T.........G................. CGGCGGCAAGCCGCCGTCACGGGCGACCACGT 36304 29 93.1 32 .T.........G................. TACGTGGCCGCCATGCAGGCCGCCGTCACCGA 36365 29 86.2 32 .T.........G.....A..........G CACAGGTAGGCGCACTGGGTCTCATGAAGCTG 36426 29 93.1 32 .T.........G................. GGCAATGAGGCCGAAAAGGGTGATCGAATTGA 36487 29 96.6 32 ............................T CATCGACGGGTTCCTCCCTCATATGGACGGCA 36548 29 96.6 32 .............G............... ATCGCACGTGATGCTGGCGAAGGTCAGCGCCC 36609 29 89.7 32 ..A..........G..........C.... GACACCTACCGGTCCGCCTGCCACGCCCTCGG 36670 29 93.1 32 ...........G............C.... AGGTCGGCAGGGAGCGGCCCGATCATGCGCTC 36731 29 100.0 32 ............................. CTGGCCCTGCCCGTCGTCCCCGCGCCGTCCCG 36792 29 100.0 32 ............................. AACCCCGCTGCTATACGGCGCCCTACTGCTGG G [36809] 36854 29 75.9 0 .............C.A.C.A.T..CC... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 94.2 32 CCGCTCCCCGCACACGCGGGGCTGTTCCC # Left flank : CACCACGCTGAACAAAGGGCGCGCGGCCATCGCGGACTCGCTGAAGATCAGGTCCCGTTGAAGGTGGTCCGCAGGGGTAATCCCTGTGGTTGCCACGCCGTACTGCGGAACAGGAGGGGCGTACTCATGGGGGCGGGAGCGGATGGATACGCCCCGCATCCAAGGAAACAGGACCATCCGCAGGGGTATCCGTGGGAGTGTGCTGGTACTGGCGGTGTGGCGCCAACTAGTTCCCGAGTAACCGAACTTCGGCATGGGGGAGGCGGGTTGCGCGGGCGCGTTCTGCTCTACGCCGGTAAGGATGGGAGTCGGCTGAGGCTTCCCGGTTCTAGGCGCGGAGTTGGGGGTGCGTGAAGAGTGCTGACAACGAGGTCGGCGGTGTTTCTCCGCGCAGAGGCACGGCATCTCCCCGACAGCGCGCGAAGAATGTCCAATATGCCGCTATCCCCGCAAGTTGCCAAACTCAATCAACCCCCCAGACAAACCCCCAGCTCAACGAG # Right flank : CAGCCCACGGAACCGCGACCACGATCTGCTCCACCCCAGCAACAACGCGAGGTAGGCACTCCCTAGCTGGAATCTCGCCCACCCTGAACACGCGACGCATCCACACGGAAACCTTCAGGGAGACACTCGCCAGGGTCACCCCAACCCCAACCCCAACCTCAACCCGAACCCCAACCGCCCCCACACCAGCGCACCACCCCGACGCGCGCCCCACGCACGACAAAGGGCCGACCACGTTTCCGTGAGTCGGCCCTTCATTGCTGAGGGTGAGTGACGGGACTCGAACCCGCGACATCCTGGACCACAACCAGGTGCTCTACCATCTGAGCTACACCCACCACGACCGGTGCTTGGGATGTTTCCCCGACCGGCCGAGAAGAAGTCTACAGGGTCTGGCGGGGTGCTCGCGCCCAGGTATTCGCGGGCACCCCCGTACGTCGCGTGCGGCTTATTCCGCCCGGAGTACGTGCCGTGCCGCGATCTTCTTGGCGGTCTCGGAG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCACACGCGGGGCTGTTCCC # Alternate repeat : GCTCCCCGCACACGCGGGGCTGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26014-27991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXF010000043.1 Streptomyces sp. J2-1 43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26014 29 100.0 32 ............................. GGGGAGCTGGACGCGGCGGTGATCGGCCGCCT 26075 29 100.0 32 ............................. GCCTCTCGGACATCGGTGCCAGGATCACCACG 26136 29 100.0 32 ............................. AAGGGCTCGGTCTCGAAGGCGGTCAAGTCGCT 26197 29 100.0 32 ............................. CGGGGGCGCTCGGCCGTGGGAACCAGCGTCGC 26258 29 100.0 32 ............................. AGCCTCGCCCACGTCTCGGGGCCAGCGGCGCC 26319 29 100.0 32 ............................. CATTCGGCGCCTCCGCAGGTCTACGTCAGAAC 26380 29 96.6 32 ............................T GATGCTGGCCGATGTGGGGTGCGAGACAATGA 26441 29 100.0 32 ............................. GAATTCGCGGGCGGCTTCGGCTTGGTCGGTGT 26502 29 100.0 32 ............................. CCTGTCTGGAGCTTTCCGCCCACGGTGACGAG 26563 29 100.0 32 ............................. CTACGCCGCATTGGCGGCGTGACCGCTCACCT 26624 29 100.0 33 ............................. CGTGCGGAGCGGTCCCCGTTGGAGCCGTACCCG 26686 29 100.0 32 ............................. GACCGCTTCTTCGGTCAGGGGCCGTTCGGGCA 26747 29 100.0 32 ............................. CCCAGCGCGGCGAGACCGGTGGCGACCGGCAC 26808 29 96.6 32 ............................T TCGTGCCTTTGAGCACGGCATGAACATCCAGG 26869 29 100.0 32 ............................. GACCCGGCCTGTCACGGGAGTTGACGTGAGAT 26930 29 100.0 32 ............................. CGGGAGCGGGGGTCCGGCCGAACCGGCGGCAC 26991 29 96.6 32 ............................G AAGGAAGAGGCTGGCGCACCTCCGGGTCCTGC 27052 29 100.0 32 ............................. CGGCGCTGGCCGCCGGGAAGCAGGTCGCCGCG 27113 29 100.0 32 ............................. ATGCCCTCGGGCATGCCCAACGTGGCGCGGGT 27174 29 100.0 32 ............................. GCGGTCGGCCAGATCCTGAAAACGCGCCTCGC 27235 29 100.0 32 ............................. CGGTTCGTCAGGGCCCGGTTCGATGGTGTCCT 27296 29 100.0 32 ............................. CGCGTCAGCGAGTTCTTCCGCAAGATCTCGAT 27357 29 100.0 32 ............................. AAGCTCGCCACCAGCTTCGGCCGGGACATGGC 27418 29 100.0 32 ............................. TCGTCAGGAGCGCGCGGGCCGTGCCTCTTTCC 27479 29 100.0 32 ............................. AACAAGTACGTCACCCAGCTCGGGCAGCAACT 27540 29 100.0 32 ............................. AGCGCGTCGCTGGCCAAGGGCGTCTGATGCGG 27601 29 96.6 32 ..............T.............. GTCATCGTGGGCACGACCGGGTACGGCGACGG 27662 29 100.0 32 ............................. AGCAGGGTCACGTTGGCGGTGCCGTGTTCGGC 27723 29 100.0 32 ............................. AGCATGAAGGCGCCGATCACCCGCCACGTCCA 27784 29 100.0 32 ............................. ATCATCGCTTTCAACATGGCCGACTCCATCGC 27845 29 96.6 32 ............T................ GACACCCAGCGCGCCGGCCTCGACGGGATGAT 27906 29 82.8 29 ......TT..T.......TA......... AACGGCTCCCCTGCGTTCTATTACGACGA 27964 28 75.9 0 .......T.A.G.G...A..A..-..... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.2 32 CTGCTCCCCGCACACGCGGGGGTGACCCC # Left flank : CCCCCTTTGCATGGTGCCCGTTCGGCACCGAACGAAGGGAGTGTGCGCCTGTTCCCCCTCGCCGAGAAGGGGTTGGCGGTTCCTTGTAGCAATCTTGACGCACAAGCCCCTCACCTGGGGCGGAGCACGCTCAACTGTCGTACACGGCCGTGACGTAGACCGTCCTCGGCGCCAGATACTCCACCACCATCACCACCGTCCCCCGCTCGATCCGCACCCCGCTCTCCGCCGCATACGCCAGAAAGTGCTCCGCCCCACCCCGAACCCGAACCATCACCTCCCCCACCAACCCCGGCCCCACCACCCCGGAAACCCGCCCCATCAGCCCAACCATCCCGGCATCGCCCATGCGGGTAGGGTACGGCCGCGGGGCGCGCTGCGAGCGGGACACGACGTTCTCACGGGCCGCGCACGGTAGGTCCCTCATGCACCTTATGCCCGACTCTCCGCAAGTGGCCCCCAGGGCGGCTCAGCCCAAGGAAACCCCCAGCTCAACGAGA # Right flank : CCGATCTCACCGTCGGCTGCCCCGCATCCAGGCTGCTCCCCCCAGCGGGCGTCGTTCAGGAAGCACCCCTTGGTCGCCCTGAGTCCTCGGACGGAGCCTGTTCCAGGAGGTGGTGGAGCCAGGCCTGGCGGGTGGTGTGGGCCTGGTGGGTTAGGTGGGCGGTGGGGGAGAGGGTTTCGAAGCCGTGGTAGGCGCCGGGCCAGATGTGGAGTTCGGTGGGGGTGGCGGAGTGGTAGAGGCGGGTGGCGTAGGTGAGGATCTCGTCGCGGAAGGTCTCGGCGGAGCCGGCGTCCAGGTAGGTCGGGGGGAGGGCGGTGAGGTCGGTGGCGCGGGCCGGGGCGGCGTAGGGGGAGACGCCGGGGGTGCCGCGGAGGGGGCCGAGGAGGGCGGTCCAGCCGGTTTCGTTGGCGGTGCGGTCCCAGACGCCTAGGCCCGCCATCTGGTGGGCGGACACCGTGTCGTTGCGGTCGTCCAGCATCGGGCTCATCAGCAACTGGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGGTGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 173635-171935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXF010000008.1 Streptomyces sp. J2-1 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 173634 29 100.0 54 ............................. ACCGCTGACGCCAAGGCGCAGACCGAGCGGATGCTCAACGCCTACCGAGCCGAG 173551 29 100.0 32 ............................. GAGACCCCCGACAGCTACCTGTCCGGCGGCGT 173490 29 100.0 32 ............................. GACCCCACCACGCTGGGCGATCTGTGGCGAAT 173429 29 100.0 32 ............................. GGCTGGTGCGTGGGGTGGCGGGCGGGCGCTGG 173368 29 100.0 32 ............................. GCCGTGACCTGCTGCGACTGGTGTGGACAGCG 173307 29 100.0 33 ............................. AGTGGCAGCGCCGCGCCGTCCAGGTGCTGGTGC 173245 29 100.0 32 ............................. TGCCGCAGACTCCCGAGGGTGTCTGCGATGAG 173184 29 100.0 32 ............................. CGGAGACGAGGAAGTCGGTGAAGCGGCGCAGT 173123 29 100.0 32 ............................. ATCGGACATGTCGAACTGGCTGTCCATCAGGA 173062 29 96.6 32 ...C......................... TCGCCCAGGAGCACACGGAGCACGCAACCGAG 173001 29 96.6 32 ...C......................... GCCGCTTCCCACTCCGGGTGTTCGGCCAGCGC 172940 29 96.6 32 ...C......................... CCGGTCGCGCAGAACCCCCCGGCGCTGAACAC 172879 29 96.6 32 ...C......................... GTCATACCTGCAGCTCTCCATTGATGTCATTC 172818 29 96.6 32 ...C......................... ACGGCGCAGCAGACGACCCTGTCGGGGTCGAT 172757 29 96.6 32 ...C......................... GGAGGGTCTCCTGCACGTAGGTGGGTGGGCAG 172696 29 93.1 32 ...C........................T TTCCGAAGGAAGGAACTTGTTTGTGAGGGTGA 172635 29 93.1 32 ..............C.............T TCCATCGGCTCCCCGATCACCTGCCACCGCTC 172574 29 93.1 32 ...........A..C.............. GTGCCGGTCGGTGGTCTCGACGGGCTGGGGTG 172513 29 100.0 32 ............................. CTGTGCAAGGGCACCGTGCACGCATGGTGGAT 172452 29 100.0 33 ............................. CGGTCTCCGACCGCATCCCCCTGCACCGCTGGA 172390 27 89.7 32 ......................--....A TCGTCCTCCTTGGCGGGGTAGGCCCGCAATCA 172331 29 96.6 32 ...A......................... GTCCGGTGCGTGACGTCCTTCAGGCCCTGCTT 172270 29 100.0 32 ............................. GGCCGGGACGTGTACCCGCGCGAGCAGTACGA 172209 29 100.0 32 ............................. TTGACCGCCTTGAGCATGTCGTACGGCCAGCG 172148 29 86.2 32 ...C.......A..C.............T TTGTCCCATTTCACGCGCATGATGCCGTCGGC 172087 29 82.8 32 ..TC.......A.CT.............. TGGGGCTGACGTCACAGAGGACGGCCCGCACC 172026 28 82.8 34 ...C.......A..C......A...-... TTCATCCCAGAACCTATCCGGTCTCAAAGTGACG T [172022] 171963 29 79.3 0 ...T.......A..C...A.A....C... | ========== ====== ====== ====== ============================= ====================================================== ================== 28 29 95.6 33 CAGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : TGGTCCTTGGGTGGAGATCCGCCCCTCGGCGTCGAGAG # Right flank : ACCTATGGGCGGCGCCGGAGCGTGCCCCCACCCCCAAACCCCCCTCACCCCACCCCCCTCCCAAACACAGCCCCCAACAGCAGTTGCGCGGCGCCCTCCGCAACCACCCCCGTGGGCCGGGGGGGTAGACGGACTGGGATGGGATTCGAGGAGATGCCCTCGCGCCAGGCGCGGGCTTCCAGGACCTCCCGTACTCCCTGGACGTACGTGTCAGGGGCCTCAAGGATCATTCGGCCGCCCAGCAGAATGAGGTCGATGTCCAGCAGCCCGACGAGATTTCCGGCCGCAACCCCCAACACCCGTGCGGCTTCCGGTACATCACCTCGCCCAGCAGCCGCGAGGCACAGCGCCTCCACGCAGCCGCGGTTGCCGCAGGAGCACAACGGGCCGTCCAGTTGCAGGACTTGGTGGCCGAACTCACCGGCACCGGTGCGGGCTCCCCGGTGTACGGTGCCGCCGATGACGAGGCTGGCGCCGAGCCCCGTACCGAGGTGGAGGTA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //